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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgttctatatccatattttgttctgtacattatcaaacggtgaggccctaagttgttttgtatgatcttttcgtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT

Basic information

species Zea mays
transcript GRMZM2G108849_T04
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13177947|gb|BG349205.1|BG349205
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|33100201|gb|CF060161.1|CF060161
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|6095470|gb|AW120137.1|AW120137
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|37383229|gb|CF628607.1|CF628607
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|6095737|gb|AW120404.1|AW120404
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATGATGGATA
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATGATGGATA
EST: gi|5510799|gb|AI857183.1|AI857183
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|32924024|gb|CF028836.1|CF028836
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGCCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|33103523|gb|CF063483.1|CF063483
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|31354590|gb|CD438947.1|CD438947
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAC
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|78022002|gb|DV490389.1|DV490389
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|44901164|gb|CK827709.1|CK827709
EST:     CCGTCAAGTTGATTGGATGGGGAACCTGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|60357237|gb|DN224210.1|DN224210
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|60347914|gb|DN214887.1|DN214887
EST:     CCGTCAAGTTGATTGGATGGGAAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|33101787|gb|CF061747.1|CF061747
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|31355458|gb|CD439815.1|CD439815
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAC
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|18963343|gb|BM660382.1|BM660382
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGTAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|60353949|gb|DN220922.1|DN220922
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|5005885|gb|AI711947.1|AI711947
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|33103672|gb|CF063632.1|CF063632
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|60347557|gb|DN214530.1|DN214530
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTTTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|32941550|gb|CF046369.1|CF046369
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|32797001|gb|CD949237.1|CD949237
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|32796767|gb|CD949003.1|CD949003
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|5922141|gb|AW055411.1|AW055411
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|24769380|gb|CA404509.1|CA404509
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAC
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|161586543|gb|EY957605.1|EY957605
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAA
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAA
EST: gi|6020622|gb|AW065655.1|AW065655
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|37376423|gb|CF624736.1|CF624736
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTCATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|32941251|gb|CF046070.1|CF046070
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|14203538|gb|BG837215.1|BG837215
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|60395804|gb|DN228674.1|DN228674
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|60400644|gb|DN233451.1|DN233451
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|60338736|gb|DN205709.1|DN205709
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|5525631|gb|AI861524.1|AI861524
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|67013050|gb|CO441799.1|CO441799
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|5525441|gb|AI861334.1|AI861334
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|16377920|gb|BI992190.1|BI992190
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|14203094|gb|BG836771.1|BG836771
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|211495925|gb|FL479314.1|FL479314
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|113702838|gb|EE680342.1|EE680342
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|60350570|gb|DN217543.1|DN217543
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|211486033|gb|FL092385.1|FL092385
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|24934282|gb|CA452500.1|CA452500
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|60348499|gb|DN215472.1|DN215472
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG                         CTTTTGGCAAATCAGTGGAATAGAGGCGGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|32797163|gb|CD949399.1|CD949399
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|5296139|gb|AI783014.1|AI783014
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|5922310|gb|AW055599.1|AW055599
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: gi|5361062|gb|AI795677.1|AI795677
EST:     CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG                         CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattatcaaacggtgaggccctaagttgttttgtatgatcttttcgtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
                                      tcttttcgtctttgc  CT-rich tract
                            ttttgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttgttctatatccatattttgttctgtacattatcaaacggtgaggccctaagttgttttgtatgatcttttcgtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA