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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctaaatgatactttcttgtactagagggcagtatatgacatgattgcgtctgaatcagcagctcagttttactgataatggcatgccttgattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCG

Basic information

species Zea mays
transcript GRMZM2G108829_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108829_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g47220.3 (Oryza sativa), 3'ss of exon 3
cctaaatgatactttcttgtactagagggcagtatatgacatgattgcgtctgaatcagcagctcagttttactgataatggca--tgccttgattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCG
 ||     |      |  |   ||      | || || | ||  || | | ||     | |      || ||   ||      |    |  |  |  ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||  |||| ||||| ||||||||||| ||||||||
-ctttgcaaactgaccgagatatactttctaataaat-atatactttcatgtgggattgtattgtgcttatagctatggcactaatcactgtactaatgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTGGCGGACTTTGGTCTTGCAAGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60349468|gb|DN216441.1|DN216441
EST:     TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggtttgc ... gattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|211496286|gb|FL041698.1|FL041698
EST:     TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTAGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggtttgc ... gattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|32871065|gb|CF010747.1|CF010747
EST:     TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggtttgc ... gattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|32932540|gb|CF037352.1|CF037352
EST:     TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggtttgc ... gattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|31350422|gb|CD434779.1|CD434779
EST:     TCTTGCTTACATGCATCAGAGGGGCTACTTTCTTCTTGACCTCAAACCTG                         AGAATCTGTTAGTGAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggtttgc ... gattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|32869779|gb|CF009461.1|CF009461
EST:     TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggtttgc ... gattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|47961778|gb|CN844487.1|CN844487
EST:     TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTAGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggtttgc ... gattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|67011156|gb|CO439905.1|CO439905
EST:     TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTAGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggtttgc ... gattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|211496285|gb|FL041697.1|FL041697
EST:     TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTAGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCTTACATGCATCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggtttgc ... gattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgtctgaatcagcagctcagttttactgataatggcatgccttgattgtgcagAGAATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCG
                    agtttta  TA-rich tract