1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatattccaataatgtggagtctagtggatatggcctagtgcacttcaaatgcctattctctggcgctgcatttgctgacattgttttattctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACTGGACCTCAGCTGCTCTTCCTTGACTTCTGTGCGGCCTTCCTTACCAAGC
species | Zea mays |
transcript | GRMZM2G107867_T04 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGATGATGCAAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAG CTTTACAAGACGAAGGACGACAAGTACCTCCTAGATATGCAGAGAGTTACTEST: gi|211186172|gb|FL452293.1|FL452293
genomic: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagta ... tctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACT
EST: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAG CTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACTEST: gi|60341419|gb|DN208392.1|DN208392
genomic: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagta ... tctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACT
EST: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAG CTTTACAAGACGAAGGACGAEST: gi|5871760|gb|AW018231.1|AW018231
genomic: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagta ... tctttctcagCTTTACAAGACGAAGGACGA
EST: ATGATGATGCAAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAG CTTTACAAGACGAAGGACGACAAGTACCTCCTAGATATGCAGAGAGTTACTEST: gi|91872727|gb|EB402684.1|EB402684
genomic: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagta ... tctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACT
EST: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAG CTTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACEST: gi|6056642|gb|AW091047.1|AW091047
genomic: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagta ... tctttctcagCTTT-ACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTAC
EST: ATGATGATGCAAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAG CTTTACAAGACGAAGGACGACAAGTACCTCCTAGATATGCAGAGAGTTACTEST: gi|211186173|gb|FL452294.1|FL452294
genomic: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagta ... tctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACT
EST: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAG CTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACTEST: gi|60398350|gb|DN231166.1|DN231166
genomic: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagta ... tctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACT
EST: ATGATGATGCAAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAG CTTTACAAGACGAAGGACGACAAGTACCTCCTAGATATGCAGAGAGTTACTEST: gi|71762342|gb|DR960279.1|DR960279
genomic: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagta ... tctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACT
EST: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAG CTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACT
genomic: ATGATGATGCTAATGGGAGGCTACCTACTGTGATCAAGTTTGAATTCCAGgtgtgtagta ... tctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACT
tcaaatgcctattctctggcgctgcatttgctgacattgttttattctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACTGGACCTCAGCTGCTCTTCCTTGACTTCTGTGCGGCCTTCCTTACCAAGC
tgctgac putative branch site (score: 108)
ttgttttattctttct CT-rich tract
attgttttattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattccaataatgtggagtctagtggatatggcctagtgcacttcaaatgcctattctctggcgctgcatttgctgacattgttttattctttctcagCTTTACAAGACGAAGGACGACAAGTACCTCTTAGATATGCAGAGAGTTACTGGACCTCAGCTGCTCTTCCTTGACTTCTGTGCGGCCTTCCTTACCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac