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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaagttgtcaaataaacatgcttgctttaggtttattgtaaatgcaaaagctcgcatggcaatcaaattagatcatttggatgtctattgcttttcagATTCTTCCGAGGAAATTGATTGATTTTCTTGATGCCCCTGTACCTTTCATT

Basic information

species Zea mays
transcript GRMZM2G107651_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107651_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g05200.2 (Oryza sativa), 3'ss of exon 12
--aaaaagttgtcaaataaac-atgcttgctttaggtttattgtaaatgcaaaagctcgcatggcaatcaaattagatcatttggatgtctattgcttttcagATTCTTCCGAGGAAATTGATTGATTTTCTTGATGCCCCTGTACCTTTCATT
   || | | | | ||||  | |     |   ||| ||| | |   || || |   || ||||     | | |  | ||    |     | | |||||||||| |||| || || |||||| | |||||||||||||| || || |||||||||
ttgaacattggactaataccctaaaagagtgatagatttgtagctcattcatata-tctcatgtt--cctattctgctctgaagtcaaacaactgcttttcagGTTCTACCAAGAAAATTGGTGGATTTTCTTGATGCTCCCGTCCCTTTCATT

upper sequence: GRMZM2G107651_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA03G32580.1 (Glycine max), 3'ss of exon 12
aaaaagttgtcaaataaacatgct-tgctttaggtttattgtaaatgcaaaagctcgcatggcaatcaaattagatcatttggatgtctattgcttttcagATTCTTCCGAGGAAATTGATTGATTTTCTTGATGCCCCTGTACCTTTCATT
   |     |  | | |||| ||  || |||  | || |  |   ||    |      ||| ||   |  |   |  || ||   |    ||||||||||| || | ||  ||||| |||||||||||||||||||||| || || |  |||
gtgagtcaatggattcaacaagccatggtttcagattttcct---tgtggcattgtcaatgtcacgtaggtctaacaatatgttagct--ttgcttttcagGTTTTACCTGGGAAAATGATTGATTTTCTTGATGCCCCAGTTCCATATATT

upper sequence: GRMZM2G107651_T01 (Zea mays), 3'ss of exon 9
lower sequence: Vv07s0005g04510.t01 (Vitis vinifera), 3'ss of exon 11
--aaaaagttgtcaaataaacatgcttgcttta--ggtttattgtaaatgcaaaagctcgcatggcaatcaaattagatcatttggatgtctattgcttttcagATTCTTCCGAGGAAATTGATTGATTTTCTTGATGCCCCTGTACCTTTCATT
     |  |  | | ||| | ||    || ||   |  | ||| |   | ||  |  ||  ||   |||    ||| ||  | | | | | |  |  |||| || || | ||||||||  || | |||||||||||||||||||| |||||||||
tacggagatacttatatacatatagaggcattgacgaataattatgggtccatgacttcatat---aattgtcttatattgtgttg-tattttatcttttttagGTTTTACCGAGGAAGATGTTCGATTTTCTTGATGCCCCTGTTCCTTTCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaaagctcgcatggcaatcaaattagatcatttggatgtctattgcttttcagATTCTTCCGAGGAAATTGATTGATTTTCTTGATGCCCCTGTACCTTTCATT
                                            ttgcttttc  CT-rich tract
                     aaattagatcattt  TA-rich tract