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...attcacttgaaaaaatgaaaatcacatggaaaaatgaggttttcaaactaaccctaaagtaatgtcgttacactggtgatttacattaatactcatgcagATCACAGAAGAGGATTCCTACTTTTCCTACCTTCCATTAGCACATATATTTGATCAAGTAATTGAGAACTACTGTATTTCTAAAGGAGCCTCCATCGGAT
species | Zea mays |
transcript | GRMZM2G104847_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGGTGTTATGACCACAGAACACCTCCTCAAAGAGACCGATAAAGTG ATCACAGAAGAGGGATTCCTACTTTTTCCTACCTEST: gi|67024206|gb|CO452955.1|CO452955
genomic: TTGCTGGTGTTATGACCACAGAACACCTCCTCAAAGAGACCGATAAAGTGgtaaagtatc ... actcatgcagATCACAGAAGAGG-ATTCCTACTTTT-CCTACCT
EST: GACCGATATAGCG ATCACAGAAGATGATTCCTATTTTTCCTACCTTCCATTAGCACATATATTTEST: gi|67024157|gb|CO452906.1|CO452906
genomic: GACCGATAAAGTGgtaaagtatc ... actcatgcagATCACAGAAGAGGATTCCTACTTTTCCTACCTTCCATTAGCACATATATTT
EST: TTGCTGGTGTTTTGACCACAGAACACCTCCTCAAAGAGACCGATAAAGTG ATCACAGAAGATGATTCCTATTTTTCCTACCTTCCATTAGCACATATATTTEST: gi|148999540|gb|EE036511.2|EE036511
genomic: TTGCTGGTGTTATGACCACAGAACACCTCCTCAAAGAGACCGATAAAGTGgtaaagtatc ... actcatgcagATCACAGAAGAGGATTCCTACTTTTCCTACCTTCCATTAGCACATATATTT
EST: TTGCTGGTGTTATGACCACAGAACACCTCCTCAAA-AGACCGATAAAGTG ATCACAGAAGAGGATTCCTACTTTTCCTACCTTCCAT-ACCACATATATTTEST: gi|211399266|gb|FL448654.1|FL448654
genomic: TTGCTGGTGTTATGACCACAGAACACCTCCTCAAAGAGACCGATAAAGTGgtaaagtatc ... actcatgcagATCACAGAAGAGGATTCCTACTTTTCCTACCTTCCATTAGCACATATATTT
EST: TTGCTGGTGTTATGACCACAGAACACCTCCTCAAAGAGACCGATAAAGTG ATCACAGAAGAGGATTCCTACTTTTCCTACCTTCCATTAGCACATATATTT
genomic: TTGCTGGTGTTATGACCACAGAACACCTCCTCAAAGAGACCGATAAAGTGgtaaagtatc ... actcatgcagATCACAGAAGAGGATTCCTACTTTTCCTACCTTCCATTAGCACATATATTT
aactaaccctaaagtaatgtcgttacactggtgatttacattaatactcatgcagATCACAGAAGAGGATTCCTACTTTTCCTACCTTCCATTAGCACATATATTTGATCAAGTAATTGAGAACTACTGTATTTCTAAAGGAGCCTCCATCGGAT
tgatttacattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcacttgaaaaaatgaaaatcacatggaaaaatgaggttttcaaactaaccctaaagtaatgtcgttacactggtgatttacattaatactcatgcagATCACAGAAGAGGATTCCTACTTTTCCTACCTTCCATTAGCACATATATTTGATCAAGTAATTGAGAACTACTGTATTTCTAAAGGAGCCTCCATCGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - -aaaaaat
- - - - - - - - gaaaatca
- - - - - - - - - - - - catggaa
- - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggtga