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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtggctggtaacattttgcacatttcagttcagctgtgttctctacaatagttttttttggaccatagtgtgtggtggaggtggtaaatcagggcatcagataaatactgcatgataattgatgagcatgagattcagcatttctattggaatgtcatgcagGCAGTCAGCACCGTGGCCAGTCATGATGATGACTACAGGAAAGCTTTGAGAGGACCGCTCTACGTCAGGATCCGTGAGTACCAGGATTCTGATGACAAGG

Basic information

species Zea mays
transcript GRMZM2G104449_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104449_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os11g36070.1 (Oryza sativa), 3'ss of exon 9
gttagtggctggtaacattttgcacatttcagttcagctgtgttctctaca---atagttttttttggaccatagtgtgtggtggaggtggtaaatcagggcatcagataaatactgcatgataattgatgagcatgagattc--------agcattt-ctattggaatgtcat-gcagGCAGTCAGCACCGTGGCCAGTCATGATGATGACTACAGGAAAGCTTTGAGAGGACCGCTCTACGTCAGGATCCGTGAGTACCAGGATTCTGATGACAAGG
|| ||||||   ||  |  | | | | ||  ||   | | || | || | |   ||||   ||||   |    ||| ||   |  |  | | |  ||  || |   | ||  |   |   |  ||||      || ||||| |        | || || ||||||   | || | |||||||||||| || ||||| | |  |||||| || |||| |||||||||||||| ||| ||||| || || ||||||||| ||| || ||||  |||||  |
gtcagtggc--atactacctcg-atacttttgtgatgatttgatatcaatatgcatagcgcttttcccattgcagtatggtctttacatag-atttcgtggtact-gctatgtggggtgagcaaattctgacacaagagatcccctgtttaaacacttgctattgacttatctttgcagGCAGTCAGTACTGTGGCAAATTGTGATGAGGATTACAAGAAAGCTTTGAGAGAACCACTCTATGTTAGAATCCGTGAGCACCGGGGTTCTACTGACATCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcatgataattgatgagcatgagattcagcatttctattggaatgtcatgcagGCAGTCAGCACCGTGGCCAGTCATGATGATGACTACAGGAAAGCTTTGAGAGGACCGCTCTACGTCAGGATCCGTGAGTACCAGGATTCTGATGACAAGG
         aattgat  putative branch site (score: 4)
       ataattgat  TA-rich tract