1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaagatcaccagttatgacaattgcatgtgttcttgttgtgtttctcagcaaatattgatggaactcaatctgaattgtcactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTTCTGAGCTAATTGTTGCATTCTCTCGGGAAGGGCCAACTAAAGAATATG
species | Zea mays |
transcript | GRMZM2G104294_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|32928790|gb|CF033602.1|CF033602
genomic: TTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAGTCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|113701122|gb|EE678626.1|EE678626
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|194716812|gb|FK933971.1|FK933971
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|60353207|gb|DN220180.1|DN220180
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|60398924|gb|DN231740.1|DN231740
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: TGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|60340539|gb|DN207512.1|DN207512
genomic: TGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: GCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|60344210|gb|DN211183.1|DN211183
genomic: GCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|67024128|gb|CO452877.1|CO452877
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: AGAACTGGGCACTTCAATCCTTTTCTTTGGATGCANNGAACCGTA-TATG GACTACATATATGAAGATGAGCTGCANACTTTCCTTTGAG-AGGGGGCGCTEST: gi|211021947|gb|FL480535.1|FL480535
genomic: AGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAG-GAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTT-GAGGAGGGGGCGCT
EST: GGATGCGGGACCCGTAATAGG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|60398791|gb|DN231607.1|DN231607
genomic: GGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|32835489|gb|CD975167.1|CD975167
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|32929541|gb|CF034353.1|CF034353
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|32835138|gb|CD974816.1|CD974816
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|211061847|gb|FL232856.1|FL232856
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: ATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|61119293|gb|DN560254.1|DN560254
genomic: ATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|60399770|gb|DN232580.1|DN232580
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: GGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|32921780|gb|CF026592.1|CF026592
genomic: GGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGACCCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTEST: gi|32920698|gb|CF025510.1|CF025510
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG GACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAACTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaaagatca ... cactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTT
tgttgtgtttctcagcaaatattgatggaactcaatctgaattgtcactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTTCTGAGCTAATTGTTGCATTCTCTCGGGAAGGGCCAACTAAAGAATATG
tattgat putative branch site (score: 769)
tcactctt putative PPT
aaatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagatcaccagttatgacaattgcatgtgttcttgttgtgtttctcagcaaatattgatggaactcaatctgaattgtcactcttaagGACTACATATATGAAGATGAGCTGCAAACTTTCCTTGAGGAGGGGGCGCTTTCTGAGCTAATTGTTGCATTCTCTCGGGAAGGGCCAACTAAAGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA