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...tgggttctgtaaaatgattaatcatttttgccagcagctccattaagaatgtgtatgatcatttggcctgcatttgtcctctcttttctctgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGTTCCCTCATGCTTATATCGAAAGGCAGGAACGTGTTCTAGCAAGCAAAG
species | Zea mays |
transcript | GRMZM2G104166_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|78543553|gb|DV621051.1|DV621051
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|20208377|gb|BQ134466.1|BQ134466
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|5895761|gb|AW037007.1|AW037007
genomic: GTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|91053809|gb|EB164227.1|EB164227
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|91056506|gb|EB166924.1|EB166924
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|5847057|gb|AW000136.1|AW000136
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|76283089|gb|DV022657.1|DV022657
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|148996412|gb|EE035707.2|EE035707
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|211188814|gb|FL462681.1|FL462681
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
agaatgtgtatgatcatttggcctgcatttgtcctctcttttctctgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGTTCCCTCATGCTTATATCGAAAGGCAGGAACGTGTTCTAGCAAGCAAAG
cctgcatttgtcctct CT-rich tract
atcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggttctgtaaaatgattaatcatttttgccagcagctccattaagaatgtgtatgatcatttggcctgcatttgtcctctcttttctctgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGTTCCCTCATGCTTATATCGAAAGGCAGGAACGTGTTCTAGCAAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- ggttctg
- - - - - - - - - - - - - - - -cagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatttg