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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaaaatggttacctaaaggaagagcatcttcttagatacaaggactcgagtattgtctgatagataattctccgccaacatttggcagGAAGCTCTTGGGGACCATTTTGCTCTCAGACATGATTGATTGATGTAGAACTGGAGTTCACAGTTTTACATCAACCTGGCCTGGGATAGATTGATATTGC

Basic information

species Zea mays
transcript GRMZM2G104147_T03
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108967|gb|DV527384.1|DV527384
EST:     AATGTCAAGATTCTATAGATGATGAGACCTTGACTTTGTCACTTCCCCAG                         GAAGCTCTTGGGGACCATTTTGCTCTCAGACATGATTGATTGATGTAGAAC
genomic: AATGTCAAGATTCTATAGATGATGAGACCTTGACTTTGTCACTTCCCCAGgttgaaaatg ... catttggcagGAAGCTCTTGGGGACCATTTTGCTCTCAGACATGATTGATTGATGTAGAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatacaaggactcgagtattgtctgatagataattctccgccaacatttggcagGAAGCTCTTGGGGACCATTTTGCTCTCAGACATGATTGATTGATGTAGAACTGGAGTTCACAGTTTTACATCAACCTGGCCTGGGATAGATTGATATTGC
                     gtctgat  putative branch site (score: 4)
                          atagataatt  TA-rich tract