1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...catttaaacagtgaaataggctgtgaacaatgtaaatcgcccttttagagaatacacgcactatatcttacagtggcatcacgtgttatattttgtcaagGGACCTGCATCAAATCCAGAAGCCAATTGTGGCCACTTTCAGTGGGCACCTGGAAAGTCTAAAGAGAAGAGCTCTAAAGAGAAACGTCTGTGACTTCATT
species | Zea mays |
transcript | GRMZM2G103458_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGTGCTCGTGCTCAG GGACCTGCATCAAATCCAGAAGCCAATTGTGGCCACTTTCAGTGGGCACCTEST: gi|211294088|gb|FL254584.1|FL254584
genomic: CTGTGCTCGTGCTCAGgtacacgtgt ... ttttgtcaagGGACCTGCATCAAATCCAGAAGCCAATTGTGGCCACTTTCAGTGGGCACCT
EST: AGAAGGGCCCTAATATAGGCCGTTTGTTCTATGTCTGTGCTCGTGCTCAG GGACCTGCATCAAATCCAGAAGCCAATTGTGGCCACTTTCAGT-GGCACCT
genomic: AGAAGGGCCCTAATATAGGCCGTTTGTTCTATGTCTGTGCTCGTGCTCAGgtacacgtgt ... ttttgtcaagGGACCTGCATCAAATCCAGAAGCCAATTGTGGCCACTTTCAGTGGGCACCT
tagagaatacacgcactatatcttacagtggcatcacgtgttatattttgtcaagGGACCTGCATCAAATCCAGAAGCCAATTGTGGCCACTTTCAGTGGGCACCTGGAAAGTCTAAAGAGAAGAGCTCTAAAGAGAAACGTCTGTGACTTCATT
atcttac putative branch site (score: 75)
ttttgtc putative PPT
ttatattttgtcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttaaacagtgaaataggctgtgaacaatgtaaatcgcccttttagagaatacacgcactatatcttacagtggcatcacgtgttatattttgtcaagGGACCTGCATCAAATCCAGAAGCCAATTGTGGCCACTTTCAGTGGGCACCTGGAAAGTCTAAAGAGAAGAGCTCTAAAGAGAAACGTCTGTGACTTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - ggctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatcac