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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttccaagtcttacttcacttttgtatggaaattgtcaatgctgggttttaatggctttctgtaaatgcaatcgcagACTTGAAGGAAACTCATTTGCCAATGGACCTGCTCCCCCGCCGCCACCTTTTATGCCACCACCCCCTCAAAGGCCACGGAATCGTCCTAAGCATCCTCAG

Basic information

species Zea mays
transcript GRMZM2G103070_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103070_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g09740.1 (Oryza sativa), 3'ss of exon 9
gtatgttccaagtcttacttcacttt-tgtatggaaattgtcaatgctgggttttaatggctttctgtaaatgcaatcgcagACTTGAAGGAAACTCATTTGCCAATGGACCTGCTCCCCCGCCGCCACCTTTTATGCCACCACCCCCTCAAAGGCCACGGAATCGTCCTAAGCATCCTCAG
|||||    |  | ||||| | |||| | | |||||||  ||  ||      | ||||| | |  || || | ||| |  ||||||| ||||||||||||  | |||||||||||||| || || ||||||||||||||||||||||||  ||| ||||| ||||| || |  ||||||| |
gtatgagatac-ttttactgccctttctctttggaaatcatctttgacacactctaatgacctgttgcaattacaaccatagACTTGGAGGAAACTCATTCACAAATGGACCTGCTCCACCACCACCACCTTTTATGCCACCACCCCCTAGAAGACCACGTAATCGGCCCAGCCATCCTCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91868538|gb|EB400066.1|EB400066
EST:     AATTTCAGTGGTTGGATACCAAAAGAATTCAGCTCCATTCCAGATGTAAC                         ACTTGAAGGAAACTCATTTGCCAATGGACCTGCTCCCCCGCCGCCACCTTT
genomic: AATTTCAGTGGTTGGATACCAAAAGAATTCAGCTCCATTCCAGATGTAACgtatgttcca ... gcaatcgcagACTTGAAGGAAACTCATTTGCCAATGGACCTGCTCCCCCGCCGCCACCTTT
EST: gi|148960881|gb|EE011562.2|EE011562
EST:     AATTTCAGTGGCTGGATACCAAAAGAATTCAGCTCCATTCCAGATGTAAC                         ACTTGAAGGAAACTCATTTGCCAATGGACCTGCTCCCCCGCCGCCACCTTT
genomic: AATTTCAGTGGTTGGATACCAAAAGAATTCAGCTCCATTCCAGATGTAACgtatgttcca ... gcaatcgcagACTTGAAGGAAACTCATTTGCCAATGGACCTGCTCCCCCGCCGCCACCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatggaaattgtcaatgctgggttttaatggctttctgtaaatgcaatcgcagACTTGAAGGAAACTCATTTGCCAATGGACCTGCTCCCCCGCCGCCACCTTTTATGCCACCACCCCCTCAAAGGCCACGGAATCGTCCTAAGCATCCTCAG
                        ttttaat  putative branch site (score: 3)
                        ttttaat  TA-rich tract