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gtatatcatagtgtcctactcaagaattttataacttgtgcatacacatgttcttgctcctgttctatgaacgttgtttgtgggtgaatcaaacttgtgagaaacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAAAAGCAAGTTGAGGAGCAATATCTCTCAAATGTGGAGAGGCAATTGGAGA
species | Zea mays |
transcript | GRMZM2G102475_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|26558420|gb|CA830655.1|CA830655
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|60349148|gb|DN216121.1|DN216121
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: TGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAAEST: gi|87156896|gb|DY401685.1|DY401685
genomic: TGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|60349348|gb|DN216321.1|DN216321
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|261490328|gb|GO359834.1|GO359834
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|149045934|gb|EE047932.2|EE047932
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAAEST: gi|22133799|gb|BQ833909.1|BQ833909
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|67015111|gb|CO443860.1|CO443860
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|60356392|gb|DN223365.1|DN223365
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAAEST: gi|67013106|gb|CO441855.1|CO441855
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAAEST: gi|60340299|gb|DN207272.1|DN207272
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
EST: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAG GTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCAGTTTCAA
genomic: CTAAACCAATTATTGATGATCCAGCCATTGTTGAGCAGAACAAGGAAAAGgtatatcata ... aacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAA
tcctgttctatgaacgttgtttgtgggtgaatcaaacttgtgagaaacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAAAAGCAAGTTGAGGAGCAATATCTCTCAAATGTGGAGAGGCAATTGGAGA
aatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatcatagtgtcctactcaagaattttataacttgtgcatacacatgttcttgctcctgttctatgaacgttgtttgtgggtgaatcaaacttgtgagaaacactacagGTATTCGAAGAATGGAAATCTATGCGCAGGGCTGAGCTGACTCGGTTTCAAAAGCAAGTTGAGGAGCAATATCTCTCAAATGTGGAGAGGCAATTGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA