1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aacggggcctaagagtaaagtatcctgattttcttttgcaagagagtttttcttgtgtgcactctatcctggttctgattaagttattgtaaaatttcagGTTGGGATCACAGAAGATTTTGAGTATTTGCAGTGATGTCCAACAGCCTATTACAGCGTCGAAAATGTGCCACGGAATGTTGGATCGATCACAGATGCAA
species | Zea mays |
transcript | GRMZM2G102242_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAACCACATTCCCAGAAGCAAAAGAACAACTGGAACATATGTACAGGGAG GTTGGGATCACAGAAGATTTTGAGTATTTGCAGTGATGTCCAACAGCCTATEST: gi|78119445|gb|DV537829.1|DV537829
genomic: CAACCACATTCCCAGAAGCAAAAGAACAACTGGAACATATGTACAGGGAGgtatgtttct ... aaaatttcagGTTGGGATCACAGAAGATTTTGAGTATTTGCAGTGATGTCCAACAGCCTAT
EST: CAACCCCATTCCCAGAAGCAAAAGAACAACTGGAACATATGTACAGGGAG GTTGGGATCACAGAAGATTTTGAGTATTTGCAGTGATGTCCAACAGCCTATEST: gi|113672751|gb|DW825103.1|DW825103
genomic: CAACCACATTCCCAGAAGCAAAAGAACAACTGGAACATATGTACAGGGAGgtatgtttct ... aaaatttcagGTTGGGATCACAGAAGATTTTGAGTATTTGCAGTGATGTCCAACAGCCTAT
EST: AGAAGCAAAAGAACAACTGGAACATATGTACAGGGAG GTTGGGATCACAGAAGATTTTGAGTATTTGCAGTGATGTCCAACAGCCTAT
genomic: AGAAGCAAAAGAACAACTGGAACATATGTACAGGGAGgtatgtttct ... aaaatttcagGTTGGGATCACAGAAGATTTTGAGTATTTGCAGTGATGTCCAACAGCCTAT
gtttttcttgtgtgcactctatcctggttctgattaagttattgtaaaatttcagGTTGGGATCACAGAAGATTTTGAGTATTTGCAGTGATGTCCAACAGCCTATTACAGCGTCGAAAATGTGCCACGGAATGTTGGATCGATCACAGATGCAA
ttctgat putative branch site (score: 40)
tgattaagttattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacggggcctaagagtaaagtatcctgattttcttttgcaagagagtttttcttgtgtgcactctatcctggttctgattaagttattgtaaaatttcagGTTGGGATCACAGAAGATTTTGAGTATTTGCAGTGATGTCCAACAGCCTATTACAGCGTCGAAAATGTGCCACGGAATGTTGGATCGATCACAGATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - ctgattt
- - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttctg