1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtaactattacaagtttcaacccttttgtcctattattactcttctcatcctgttgtgaagaatgtgacaaaataatatgtttggctgattcagctttactttttgtttagTGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG
species | Zea mays |
transcript | GRMZM2G102196_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATGGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAA TGACGAGCTGGAGAGATGCACAAGCAGTTCTCTGAAGTTGACCAAGCATCAEST: gi|60354570|gb|DN221543.1|DN221543
genomic: ACATGGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAAgtatgtaact ... ttttgtttagTGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCA
EST: CATGGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAA TGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCAEST: gi|60339229|gb|DN206202.1|DN206202
genomic: CATGGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAAgtatgtaact ... ttttgtttagTGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCA
EST: GGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAA TGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCAEST: gi|60340698|gb|DN207671.1|DN207671
genomic: GGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAAgtatgtaact ... ttttgtttagTGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCA
EST: GGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAA TGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCAEST: gi|60337011|gb|DN203984.1|DN203984
genomic: GGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAAgtatgtaact ... ttttgtttagTGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCA
EST: GGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAA TGACGAGACTGGAGAGATGCACAAGCATGTTTTCTGAAGTTGACCAAGCAT
genomic: GGCAACTTCAGTTGTCATACAATGAACAGAAGGAAACTAAAACGAAgtatgtaact ... ttttgtttagTGACGAG-CTGGAGAGATGCACAAGCA-GTTTTCTGAAGTTGACCAAGCAT
tgaagaatgtgacaaaataatatgtttggctgattcagctttactttttgtttagTGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG
ggctgat putative branch site (score: 98)
ctttactttttgttt putative PPT
acaaaataatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaactattacaagtttcaacccttttgtcctattattactcttctcatcctgttgtgaagaatgtgacaaaataatatgtttggctgattcagctttactttttgtttagTGACGAGCTGGAGAGATGCACAAGCAGTTTTCTGAAGTTGACCAAGCATCATCTTTCCTATTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG