Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagatgcttggtgcttttgttgagctctgaagacattttcttgtagtactccagagatagcattcaatatattctatttctatctttatgttttattagGAAGCTCTATCTGCAGCGTTTGGAAATGGTTTATCTACAACTTGTGTTGTCAACATTGGTGCTCAAGTTACACAAGTAGTTTGTGTTGAG

Basic information

species Zea mays
transcript GRMZM2G101250_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101250_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os04g09860.1 (Oryza sativa), 3'ss of exon 9
aaagatgcttggtgcttttgttgagctctgaagacattttcttg-tagtactccagagatagcattcaatatattctatttctatctttatgttttattagGAAGCTCTATCTGCAGCGTTTGGAAATGGTTTATCTACAACTTGTGTTGTCAACATTGGTGCTCAAGTTACACAAGTAGTTTGTGTTGAG
 |||     | |     | |     |    |||  || |  ||| |  | | | ||      |||| || ||  |   ||  | | | |||| |||  |||||||||||| ||||||| ||||||||||| || || ||| ||||||| ||||||||||| || |||||||||||||||||||||||||||
-aaggcttgtagaagaatagccattcaaccaagttatgtgtttgatgatccacaagttgagacattgaacatccttatttcttctgtatatgctttgatagGAAGCTCTAGCTGCAGCATTTGGAAATGGCTTGTCGACATCTTGTGTGGTCAACATTGGCGCGCAAGTTACACAAGTAGTTTGTGTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211522218|gb|FK975676.1|FK975676
EST:     TGTCTATTGTCCTTCATGATTTGGGGTTCAGCACTGCAGTTGTACATCAG                         GAAGCTCTATCTGCAGCGTTTGGAAATGGT
genomic: TGTCTATTGTCCTTCATGATTTGGGGTTCAGCACTGCAGTTGTACATCAGgtttgccttt ... gttttattagGAAGCTCTATCTGCAGCGTTTGGAAATGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtactccagagatagcattcaatatattctatttctatctttatgttttattagGAAGCTCTATCTGCAGCGTTTGGAAATGGTTTATCTACAACTTGTGTTGTCAACATTGGTGCTCAAGTTACACAAGTAGTTTGTGTTGAG
                                              ttttatt  CT-rich tract
                 attcaatatattctat  TA-rich tract