1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gcagctcatctttgggatgttgtgattttctgtgtggatgctatgttcttttcatttccaaggatgttttctcctcaaacttaaattgcttctgttgcagTACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA
species | Zea mays |
transcript | GRMZM2G100913_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTT TACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGAEST: gi|26559055|gb|CA831290.1|CA831290
genomic: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTTgtatgtcttt ... tctgttgcagTACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGA
EST: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTT TACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGAEST: gi|31364271|gb|CD448626.1|CD448626
genomic: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTTgtatgtcttt ... tctgttgcagTACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGA
EST: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTT TACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGAEST: gi|211250423|gb|FL206024.1|FL206024
genomic: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTTgtatgtcttt ... tctgttgcagTACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGA
EST: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTT TACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGAEST: gi|213179909|gb|FM186344.1|FM186344
genomic: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTTgtatgtcttt ... tctgttgcagTACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGA
EST: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTT TACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGAEST: gi|22549188|gb|BU101389.1|BU101389
genomic: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTTgtatgtcttt ... tctgttgcagTACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGA
EST: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTT TACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGA
genomic: GTGGCTTTTATGCTTGCAATCGTTATGAATCAGCAAAGAAAGAGGGAGTTgtatgtcttt ... tctgttgcagTACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGA
ttcttttcatttccaaggatgttttctcctcaaacttaaattgcttctgttgcagTACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA
ttgcttct CT-rich tract
aaacttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagctcatctttgggatgttgtgattttctgtgtggatgctatgttcttttcatttccaaggatgttttctcctcaaacttaaattgcttctgttgcagTACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACA
gcagctc
- - - - - - - - - - tgtgatt
- - - - - - - - - - - - - -ttctgtg
- - - - - - - - - - - - - - - - - tggatgc