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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttagaaaattgttatattacctgatattgttgtgaaatctcgattggtaatctcagaatgttatgacaagttcattttatctctgggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGACAATTCATCCCTCATTTCATGAAGTGATGAAATAACCGAAGGGGATTTT

Basic information

species Zea mays
transcript GRMZM2G100454_T03
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32930759|gb|CF035571.1|CF035571
EST:     CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG                         GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCCCGA
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: gi|24766283|gb|CA401438.1|CA401438
EST:     CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG                         GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: gi|76910149|gb|DV163727.1|DV163727
EST:     CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG                         GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: gi|32930838|gb|CF035650.1|CF035650
EST:     CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG                         GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: gi|42491831|gb|CK700877.1|CK700877
EST:     ATATCNTTTGTGCCAGGCCAAACCCNNAGCAGCGGCCTTCTATGGGAGAG                         GTTGTTCGCCTTATTGAGATAGAAACTGAGCATATCAGGGATTTGTCACGA
genomic: ATATC-TTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: gi|32931339|gb|CF036151.1|CF036151
EST:     CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG                         GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: gi|40287084|gb|CK327476.1|CK327476
EST:     CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG                         GTTGTTCGCCTTATTGAGATAGAAACTGAGCATATCAGGGATTTGTCACGA
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgattggtaatctcagaatgttatgacaagttcattttatctctgggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGACAATTCATCCCTCATTTCATGAAGTGATGAAATAACCGAAGGGGATTTT
                               ttcattttat  TA-rich tract