Sequence
atgc intronic sequence ATGC exonic sequencegtaattaatctcacctgatcacctatgatctgatgatttacagccacagtgattatccatattgtacttcaaatgtgattacttgttcataccagGGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G097502_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 3'ss of exon 11
gtaattaatctcacc--tgatcacctatgatctgatgatttacagccacagtgattatccatattgtacttcaaatgtgattacttgttcataccagGGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
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gtaatatatcctatccttgcatgcctgtgacctcattacttacaattgcaaaaactatccatttcttactgagaatatgattgtctgttcaccccagAGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
upper sequence: GRMZM2G097502_T01 (Zea mays), 3'ss of exon 9
lower sequence: AT5G08660.1 (Arabidopsis thaliana), 3'ss of exon 11
----gtaattaatctcacctgatcacctatgatctgatgatttacagccacagtgattatccatattgtacttcaaatgtgattacttgttca--taccagGGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
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gtaagcatctgacccttctttcgtcattttgactttacaatttttgatctcggtatatagttttatctttaatggctaatgattgttgaatgggttcacagAGCGCATCATGGTTTTGGCTGGGTTGGAGAGTGGGCAAATACAGG
upper sequence: GRMZM2G097502_T01 (Zea mays), 3'ss of exon 9
lower sequence: PP1S126_154V6.1 (Physcomitrella patens), 3'ss of exon 10
-gtaattaatctcacctgatcacctatgatctgatgatttacagccacagtgattatccat------attgtacttcaaatgtgattacttgttcataccagGGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
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tgtattttaaagtgcatttatgc-tatgaagt-atgattttcaagaggtgatatcatggacttaataattgtcttcgggaattcgttgcttctggcgttcagGGCTCACCATGGATTTGGATGGGTTGGTGAGTGGGCAAATACTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211428447|gb|FL143038.1|FL143038EST: CTTTGCGTTGGCTTGTCCCTTTTGCTAGTAACACAAATAG GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
genomic: CTTTGCGTTGGCTTGTCCCTTTTGCTAGTAACACAAATAGgtaattaatc ... ttcataccagGGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagccacagtgattatccatattgtacttcaaatgtgattacttgttcataccagGGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
cttgttc CT-rich tract
atattgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattaatctcacctgatcacctatgatctgatgatttacagccacagtgattatccatattgtacttcaaatgtgattacttgttcataccagGGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA