1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atatatggaagaatgctttcaaaacggggttccctcatttccatttccagaatatacttgatattatgtgtactttactgtgggcctcatctttctgtagATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG
species | Zea mays |
transcript | GRMZM2G097226_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGGGGGTAAAGATGTTACCATTACTGCATTCTCCAAGATGGTTEST: gi|32829636|gb|CD969314.1|CD969314
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|211317947|gb|FL318710.1|FL318710
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|32829111|gb|CD968789.1|CD968789
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|60343110|gb|DN210083.1|DN210083
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTEST: gi|211088145|gb|FL307530.1|FL307530
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
EST: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAG ATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
genomic: CTGCTGAAGTGCTTGATTCTAGTTTTTGCCTACCGATTGGCAAAGCTAAGgtatgttgtg ... ctttctgtagATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTT
tccagaatatacttgatattatgtgtactttactgtgggcctcatctttctgtagATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG
acttgat putative branch site (score: 5)
cctcatctttctgt putative PPT
aatatacttgatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatggaagaatgctttcaaaacggggttccctcatttccatttccagaatatacttgatattatgtgtactttactgtgggcctcatctttctgtagATAGAACGTGAGGGTAAAGATGTTACCATTACTGCGTTCTCCAAGATGGTTGGCTATGCTCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG