1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacaaaccatttgtaacagatttctcaggatttcttatgttctatctgtttaggtacgactttgtaatgtgggagactggtagctttggagatttttcaccgttctaaatgtttgcccatttctgtggagttgaatagaattgttgtgcaaagcatttccatgcactgaaatatatgcttgtggctcttctgcagATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACACCCGAGCAGCTGAGTTCGTTGCCACCAGAGCAACAGCAGCAGGTGATTG
species | Zea mays |
transcript | GRMZM2G096480_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTATAGTGCTGGTGCTGGTAGCTTACAACAACCAGGGAATGAAGGGCAG ATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACAEST: gi|211055185|gb|FL434244.1|FL434244
genomic: GCTATAGTGCTGGTGCTGGTAGCTTACAACAACCAGGGAATGAAGGGCAGgtacaaacca ... tcttctgcagATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACA
EST: GCTATAGTGCTGGTGCTGGTAGCTTACAACAACCAGGGAATGAAGGGCAG ATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACAEST: gi|32867339|gb|CF007021.1|CF007021
genomic: GCTATAGTGCTGGTGCTGGTAGCTTACAACAACCAGGGAATGAAGGGCAGgtacaaacca ... tcttctgcagATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACA
EST: GCTATAGTGCTGGTGCTGTTAGCTTACAACAACCAGGGAATGAAGGGCAG ATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACAEST: gi|60396499|gb|DN229368.1|DN229368
genomic: GCTATAGTGCTGGTGCTGGTAGCTTACAACAACCAGGGAATGAAGGGCAGgtacaaacca ... tcttctgcagATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACA
EST: GCTATAGTGCTGGTGCTGGTAGCTTACAACAACCAGGGAATGAAGGGCAG ATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACAEST: gi|71300159|gb|DR786159.1|DR786159
genomic: GCTATAGTGCTGGTGCTGGTAGCTTACAACAACCAGGGAATGAAGGGCAGgtacaaacca ... tcttctgcagATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACA
EST: GCTATAGTGCTGGTGCTGGTAGCTTACAACAACCAGGGAATGAAGGGCAG ATTACGCCTGATGTGGAGTCAGCTTTTCTGCAGCAAGTCTTGCAGCTGACA
genomic: GCTATAGTGCTGGTGCTGGTAGCTTACAACAACCAGGGAATGAAGGGCAGgtacaaacca ... tcttctgcagATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACA
ttgttgtgcaaagcatttccatgcactgaaatatatgcttgtggctcttctgcagATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACACCCGAGCAGCTGAGTTCGTTGCCACCAGAGCAACAGCAGCAGGTGATTG
ctcttctgc CT-rich tract
tgaaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaaccatttgtaacagatttctcaggatttcttatgttctatctgtttaggtacgactttgtaatgtgggagactggtagctttggagatttttcaccgttctaaatgtttgcccatttctgtggagttgaatagaattgttgtgcaaagcatttccatgcactgaaatatatgcttgtggctcttctgcagATTACGCCTGATGTGGAGTCAGCTCTTCTGCAGCAAGTCTTGCAGCTGACACCCGAGCAGCTGAGTTCGTTGCCACCAGAGCAACAGCAGCAGGTGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA