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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgctccacactccacagcattcatcatatagaagtgaagcatttcacagttcttccactattgtctcattcaaccaaattccatgtttttacagATGAATCTATGGGAAGATACTTAGGAATAGGTGCTCCTAGGAACTCAAGTGCAGAATATCAATCATCTCTCAATGATGTATCTGTTAATCCAATAGAAAA

Basic information

species Zea mays
transcript GRMZM2G095727_T04
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5268666|gb|AI770630.1|AI770630
EST:     GTTACCGACAGCAAACAAAAGGAATGTCAAGAAACAGAAGGAGAATAAAG                         ATGAATCTATGGGAAGATACTTAGGAATAGGTGCTCCTAGGAACTCAAGTG
genomic: GTTACCGACAGCAAACAAAAGGAATGTCAAGAAACAGAAGGAGAATAAAGgtatatgctc ... gtttttacagATGAATCTATGGGAAGATACTTAGGAATAGGTGCTCCTAGGAACTCAAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcacagttcttccactattgtctcattcaaccaaattccatgtttttacagATGAATCTATGGGAAGATACTTAGGAATAGGTGCTCCTAGGAACTCAAGTGCAGAATATCAATCATCTCTCAATGATGTATCTGTTAATCCAATAGAAAA
                                            tgttttt  CT-rich tract
                                           atgttttta  TA-rich tract