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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaaaacataatatcagtgtcattactaggttattaacataacagtaagttgcatgctaacccattatgatttctgcaagGTACCATACATCTGTGGCTTCCAATCAAGGTGGAGCAAGATATGGGGAAAGCTCTTCACCACAAGATAACAGTTCTGAGGCCATGAAAACGGACTCTACA

Basic information

species Zea mays
transcript GRMZM2G095727_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095727_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g17570.1 (Oryza sativa), 3'ss of exon 9
gtgcaaaacataatatcagtgtcattactaggttattaacataacagtaagttgcatgctaacccattatgatttctgcaagGTACCATACATCTGTGGCTTCCAATCAAGGTGGAGCAAGATATGGGGAAAGCTCTTCACCACAAGATAACAGTTCTGAGGCCATGAAAACGGACTCTACA
|||||||| ||||||||||||||| | ||  ||||| |||||  || ||| |||| | ||||    || | || | |||||||||||||||| |||||||||| ||||||||||||||  ||| ||||| ||||| |||||| |||||||||||||| |||||  ||||||| ||||| |  
gtgcaaaaaataatatcagtgtcactcctgagttatgaacatggcaataaattgcgtactaatgttttcttatct-tgcaagGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAAGCTGTTCACCTCAAGATAACAGTTCAGAGGCTCTGAAAACAGACTCCAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626406|gb|AW257938.1|AW257938
EST:     CATGATGAGCGAAATATTCTGAAAAGATCAGATCAGTCAGCCTTCACCAG                         GTACCATACATCTGTGGCTTCCAATCAAGGTGGAGCAAGATATGGGGAAAG
genomic: CATGATGAGCGAAATATTCTGAAAAGATCAGATCAGTCAGCCTTCACCAGgtgcaaaaca ... tttctgcaagGTACCATACATCTGTGGCTTCCAATCAAGGTGGAGCAAGATATGGGGAAAG
EST: gi|211394782|gb|FL368057.1|FL368057
EST:     CATGATGAGCGAAATATTCTGAAAAGATCAGATCAGTCAGCCTTCACCAG                         GTACCATACATCTGTGGCTTCCAATCAAGGTGGAGCAAGATATGGGGAAAG
genomic: CATGATGAGCGAAATATTCTGAAAAGATCAGATCAGTCAGCCTTCACCAGgtgcaaaaca ... tttctgcaagGTACCATACATCTGTGGCTTCCAATCAAGGTGGAGCAAGATATGGGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaggttattaacataacagtaagttgcatgctaacccattatgatttctgcaagGTACCATACATCTGTGGCTTCCAATCAAGGTGGAGCAAGATATGGGGAAAGCTCTTCACCACAAGATAACAGTTCTGAGGCCATGAAAACGGACTCTACA
                             tgctaac  putative branch site (score: 1)
                                             tttctgc  putative PPT
     ttattaacataaca  TA-rich tract