Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacacaagaataaggccaacacatgggtctccaaacaagccctataatggaagtcccaactgtcatagctatattgacaatgtatatattctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGATGCCATACACGCTGCAGTTACTCAACTGAAATGAGGATAGTATCGCAGC

Basic information

species Zea mays
transcript GRMZM2G094712_T04
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094712_T04 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 11
-------------------------------------------------------------------------------------------cacacaagaataaggccaacacatgggtctccaaacaag--ccctataatggaagtcccaactgtcatagct-atattgacaatgtatatattctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGATGCCATACACGCTGCAGTTACTCAACTGAAATGAG-GATAGTATCGCAGC
                                                                                            | |  || | | |  | |       || || |    ||   ||| |  |  | || ||   |    ||||| || || ||||   | |||||  | ||||||||||||||| ||||| |||||||||  ||||||  | || |||||||||||||| || || || ||||| ||  ||||||| |||  ||| ||| |  || 
gtaattgtctaatttagctattgtgcaacactcgcaattatgtttgtatgatctaagtctgcagttatacaaactatataatttttagttctataacagtagatgatctatcttactgtttctatggtagtttcctttgctaaatgttcctttt----tagctcatctttacaagccaaatatttctcttgcagGAGGATCAGTATGGCTGGTTTGAGCGGGAGGACCATTCCGCATCTTGCAGATGCAATCCATGCCGCAGTCACAAAACTGAAGTGAATGATGGTAGCATAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24764022|gb|CA399191.1|CA399191
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32927305|gb|CF032117.1|CF032117
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|61118378|gb|DN559339.1|DN559339
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|24767122|gb|CA402266.1|CA402266
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32927492|gb|CF032304.1|CF032304
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|92088137|gb|EB484368.1|EB484368
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGCTTTGAGCATGAGGACTGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGG-TTTGAGCATGAGGACTGTGCCCCATCTTGCAG
EST: gi|7162311|gb|AW519918.1|AW519918
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32930089|gb|CF034901.1|CF034901
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32927574|gb|CF032386.1|CF032386
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|4775842|gb|AI664847.1|AI664847
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|4874332|gb|AI673852.1|AI673852
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32915489|gb|CF020301.1|CF020301
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|211187210|gb|FL054032.1|FL054032
EST:     CAAGTGGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|31362360|gb|CD446717.1|CD446717
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32934326|gb|CF039138.1|CF039138
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32835718|gb|CD975396.1|CD975396
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|12970347|gb|BG266938.1|BG266938
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|56382527|gb|CV985196.1|CV985196
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|5936779|gb|AW060047.1|AW060047
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32929180|gb|CF033992.1|CF033992
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCGGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG
EST: gi|32927870|gb|CF032682.1|CF032682
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|24767776|gb|CA402912.1|CA402912
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCTGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32837083|gb|CD976761.1|CD976761
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|33095048|gb|CF055042.1|CF055042
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32867607|gb|CF007289.1|CF007289
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32927166|gb|CF031978.1|CF031978
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATG
EST: gi|33942473|gb|CF349073.1|CF349073
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32846172|gb|CD985853.1|CD985853
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG
EST: gi|211187208|gb|FL054030.1|FL054030
EST:     CAAGTGGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32929191|gb|CF034003.1|CF034003
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32928849|gb|CF033661.1|CF033661
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|78080376|gb|DV508788.1|DV508788
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|67020983|gb|CO449732.1|CO449732
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|31356146|gb|CD440503.1|CD440503
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32833147|gb|CD972825.1|CD972825
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|78080377|gb|DV508789.1|DV508789
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32866948|gb|CF006630.1|CF006630
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|4874452|gb|AI673972.1|AI673972
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32927161|gb|CF031973.1|CF031973
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32846059|gb|CD985740.1|CD985740
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGGGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|67016151|gb|CO444900.1|CO444900
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGGTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|24764697|gb|CA399860.1|CA399860
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|67024830|gb|CO453579.1|CO453579
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|38502478|gb|CF972338.1|CF972338
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|6918687|gb|AW400217.1|AW400217
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|33102270|gb|CF062230.1|CF062230
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG
EST: gi|4837574|gb|AI670664.1|AI670664
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|67038272|gb|CO464602.1|CO464602
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|31352660|gb|CD437017.1|CD437017
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCTGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|60341541|gb|DN208514.1|DN208514
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|10450878|gb|BE924802.1|BE924802
EST:     CAAGTCGCATTCATGAGGCAGGAATACCCCATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32835738|gb|CD975416.1|CD975416
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG
EST: gi|78027140|gb|DV495527.1|DV495527
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32837197|gb|CD976875.1|CD976875
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32927046|gb|CF031858.1|CF031858
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCA
EST: gi|4775838|gb|AI664843.1|AI664843
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32929220|gb|CF034032.1|CF034032
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|4885950|gb|AI677070.1|AI677070
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAG
EST: gi|6564018|gb|AW231640.1|AW231640
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|20507971|gb|BQ279844.1|BQ279844
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|31356689|gb|CD441046.1|CD441046
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32927179|gb|CF031991.1|CF031991
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|211132391|gb|FL440020.1|FL440020
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|33100553|gb|CF060513.1|CF060513
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG
EST: gi|74052515|gb|DN591123.1|DN591123
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGG-CCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAG
EST: gi|32933396|gb|CF038208.1|CF038208
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGGTGCCCCATCTTGCAG
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTG-TGCCCCATCTTGCAG
EST: gi|32927057|gb|CF031869.1|CF031869
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|32930921|gb|CF035733.1|CF035733
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|211132390|gb|FL440019.1|FL440019
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|33100547|gb|CF060507.1|CF060507
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|4874418|gb|AI673938.1|AI673938
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
EST: gi|149072592|gb|EE286792.2|EE286792
EST:     CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGG                         GAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA
genomic: CAAGTCGCATTCATGAGGCAGGAATACCACATTTATATGACATCTGATGGgtaatttgtc ... ctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggaagtcccaactgtcatagctatattgacaatgtatatattctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGATGCCATACACGCTGCAGTTACTCAACTGAAATGAGGATAGTATCGCAGC
                          tattgac  putative branch site (score: 2)
                                         tattcttttt  putative PPT
                        tatattgacaatgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacacaagaataaggccaacacatgggtctccaaacaagccctataatggaagtcccaactgtcatagctatattgacaatgtatatattctttttgcagGAGGATCAGCATGGCCGGTTTGAGCATGAGGACTGTGCCCCATCTTGCAGATGCCATACACGCTGCAGTTACTCAACTGAAATGAGGATAGTATCGCAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT