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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcatgttggtctcatgatttatttaccatctatttcattttgttgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG

Basic information

species Zea mays
transcript GRMZM2G094497_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
tagcatgttggtctcatgatttat-ttaccatctatttcat--tttgttgggcatttaatactagtataccatgtctaatattgtaat-ctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
| || |       | |  |||||| |||  | ||| |   |  ||||||  |  || || | ||    |  |||| ||| |||||  |  | |  |  |||||||||| ||||| ||||||||||| ||||| || |||||||| || ||||||||||||||||| |||||||| ||||||||||||
ttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaata----aatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG

upper sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G42940.3 (Glycine max), 3'ss of exon 10
tagcatgttggtctcatgatttatttaccatctatttcattttgttgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
     |  ||   | || |    || | || |||| |    | | |||    |||| |||        |||  || |||| | | || |       |||||||| || |||||||||||||| || || ||||| || |||||||| ||||||||||| || ||||||||  |||| ||||||
----gtaatgaaat-at-acaagttcatcagctatcttgcat-gatggtttcttaacactga------atgatta-tattttgaacttctgt----acagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG

upper sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G38110.1 (Glycine max), 3'ss of exon 10
tagcatgttggtctcatgatttatttaccatctatttcattttgttgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
             | ||||  ||||    |    | |||  |  |   ||||     |||   |   |      | | || |  |  | |      |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| |  ||||||| |||
------------gtgatgaaatattattgaatcttatcagct-atcatgcataatgcactctcaattctgactgattgtttttcttgaacttctgtacagATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG

upper sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 11
tagcatgttggtctcatgatttatttaccatctatttcattttgttgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
             | ||||   || ||  |  || |    | | |||   | |   |  ||  |    |||  || |||| | | || |       |||||||| || |||||||||||||| || || ||||| || |||||||| ||||||||||| || ||||||||  |||| ||||||
------------gtaatgaa--atatagaagttaatcagctatcttgcataat-ggttttaacactgaatgatta-tattttgaacttctgt----acagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG

upper sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 10
tagcatgttggtctcatgatttatttaccatctatttcattttgttgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG-
             | ||||  ||||    |    | |||  |  |   |||||    |||   |   |      | |||| |  |  | |      |||||||| || || ||||||||||| ||||| ||||| |||||||||||||||||||| || || || ||| |  ||||||| ||| 
-------------tgatgaaatattattgaatcttatcagct-atcatgcattatgcactctcaattctgactgattatttttcttgaacttctgtacagaTATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGG

upper sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 10
tagcatgttggtctcatgatttatttaccatctatttcattttgttgggcatttaatactagtataccatgtctaat-attgtaatct-acccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
        |    ||||  ||  |   |||     |  ||| | ||    || |  |   |  |  | ||   || |  ||||  | | ||   |  | |||||||||| || |||||||| || |||||||| ||||||||||| || |||||||| || |||||||| || || |||||||||
-------gtaaaatcatctttcttaagccaatccctagattctattttttatct--tgagaaaactcaattcttactcgttgttgtttgacaaattgatcagATATCACTCATCCAACTCCGGATCTTACTGGTTACATTACTGAAGGTCAGATATATATCGATAGGCAACTTCACAACAGACAG

upper sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 10
tagcatgttggtctcatgatttatttaccatctatttcattt-tgttgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaac--agATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
          ||    |  |||||      |  ||| ||||  | |      ||   |  |  |  | ||   || ||| | |    |     ||||||  ||||||||| ||||| ||||| || |||||||| |||||||||||||| |||||||| ||||||||||| || || |||||||||
----------gtaattttttttatcgtttttggattccattcatatcaaatgtt---ttttgattaaacaaagctcataatatttcttgttattaaaactcagATATCACTCACCCTACTCCGGATCTTACTGGTTACATTACTGAGGGTCAGATATATATTGATAGGCAACTTCACAACAGACAG

upper sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 10
tagcatgttgg---tctcatgatttatttaccatctatttcattttgttgggcatt-taatact-agtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
    ||||| |   | ||| ||| |  |  | ||   |  |      |  |   || ||||| | |  | ||  |  || | |        |     |  | ||||||| || || |||||||| || |||||||| || ||||||||||| |||||||||||||||||||| ||||| ||| | |||
-gtaatgttagcattttcaggatgt-ctggctattcttccctgcacatcagttcttgtaatagtgaacagacattacctgaaaccaattattttttgtccaccagATATTACGCATCCAACTCCAGATCTTACTGGTTATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAG

upper sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
lower sequence: EFJ13375 (Selaginella moellendorffii), 3'ss of exon 9
tagcatgttggtctcatgatttatttaccatctatttcattttgttgggcatttaatactag-tataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
                                                        ||| || | |   ||     | ||  |   ||  |       |||||||||| || || | |||||| || ||||| |||||||||||||||||||| ||  | ||  | || ||| | ||  | |||
-------------------------------------------------------gtacgagatgtctgatcatcgagatcatctactgacttactcgcagATATCACTCATCCGATTCCTGATCTCACTGGTTACATTACTGAGGGACAGATTTATGTGGACCGTCAACTCTACAATCGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929245|gb|CF034057.1|CF034057
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|5915388|gb|AW053029.1|AW053029
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|31352565|gb|CD436922.1|CD436922
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|6445489|gb|AW179407.1|AW179407
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|32928465|gb|CF033277.1|CF033277
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|4681248|gb|AI629918.1|AI629918
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTG
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTG
EST: gi|31352616|gb|CD436973.1|CD436973
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|32928932|gb|CF033744.1|CF033744
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTACCGATG                         ATATCGCACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGCCAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|67022236|gb|CO450985.1|CO450985
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|211474169|gb|FL062077.1|FL062077
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|67040204|gb|CO466459.1|CO466459
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|32929097|gb|CF033909.1|CF033909
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|32944174|gb|CF048993.1|CF048993
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|13125954|gb|BG316629.1|BG316629
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|32838699|gb|CD978380.1|CD978380
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|6056572|gb|AW090977.1|AW090977
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|33092363|gb|CF052357.1|CF052357
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|32928990|gb|CF033802.1|CF033802
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|32944913|gb|CF049732.1|CF049732
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|31352900|gb|CD437257.1|CD437257
EST:     TTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: TTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|31351441|gb|CD435798.1|CD435798
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|32928322|gb|CF033134.1|CF033134
EST:     AAGAACAGGCTCCACTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|211466584|gb|FL062035.1|FL062035
EST:     CAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: CAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|67020067|gb|CO448816.1|CO448816
EST:     GAACAGGCTCCATTTACC-ANATTCCTATTCTAAAACATGCCTA-CGATG                         ATATCACACACCCAACTCCTTGAC-TTACTGGATACATTACTG
genomic: GAACAGGCTCCATT-ACCCAGATTCCTATTCTAACA-ATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCT-GACCTTACTGGATACATTACTG
EST: gi|24934300|gb|CA452518.1|CA452518
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|33101328|gb|CF061288.1|CF061288
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|6021392|gb|AW066320.1|AW066320
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|13125942|gb|BG316617.1|BG316617
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|13125963|gb|BG316638.1|BG316638
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|60343460|gb|DN210433.1|DN210433
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|13125933|gb|BG316608.1|BG316608
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTA
EST: gi|4152268|gb|AI372402.1|AI372402
EST:     TACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: TACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
EST: gi|31351755|gb|CD436112.1|CD436112
EST:     AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATG                         ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA
genomic: AAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaagtaacc ... cctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggcatttaatactagtataccatgtctaatattgtaatctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG
                                            ccctaaa  putative branch site (score: 3)
                                       tctacccct  CT-rich tract
     atttaatactagtata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC