Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattctatatttgctgcaatgcccaatttactatatttttgtgaacttcaattcccatgagtatgtgaaaaagtgagtgaaattatatcctgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACCAATTTGGTTGAAGAGGTTAAAGTGTTACTGGATGAGATTCAAAAAAATC

Basic information

species Zea mays
transcript GRMZM2G094123_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191670|gb|FL030585.1|FL030585
EST:     GTGTTCCATTGAGAATTGANATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGAC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGAC
EST: gi|7031274|gb|AW461012.1|AW461012
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCC
EST: gi|62525869|gb|DN828517.1|DN828517
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|60353211|gb|DN220184.1|DN220184
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|60347786|gb|DN214759.1|DN214759
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|26559243|gb|CA831478.1|CA831478
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|24766734|gb|CA401881.1|CA401881
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGNTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGAC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCG-TGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGAC
EST: gi|50325822|gb|CO520948.1|CO520948
EST:     TGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACT
genomic: TGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|60347846|gb|DN214819.1|DN214819
EST:     GTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|166523126|gb|EG138440.1|EG138440
EST:     TTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: TTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|91052462|gb|EB162880.1|EB162880
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|60338824|gb|DN205797.1|DN205797
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|22521630|gb|BU080441.1|BU080441
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|60357064|gb|DN224037.1|DN224037
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|31354358|gb|CD438715.1|CD438715
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|32792808|gb|CD945044.1|CD945044
EST:     GATCTGGCAAACAAATAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|76286941|gb|DV026509.1|DV026509
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|67020078|gb|CO448827.1|CO448827
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|60339891|gb|DN206864.1|DN206864
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|32935632|gb|CF040444.1|CF040444
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|50325823|gb|CO520949.1|CO520949
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACT
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|91055004|gb|EB165422.1|EB165422
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|60353004|gb|DN219977.1|DN219977
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|32797678|gb|CD949914.1|CD949914
EST:     GATCCGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|60348773|gb|DN215746.1|DN215746
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|6501100|gb|AW202473.1|AW202473
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|67027210|gb|CO455959.1|CO455959
EST:     GTGTTCCATTGAGAATTGAGATTGGTC-AAAAGATCTGGCAA-CAAACAG                         GTGCGTGTTGTCCGCCGGGACAACG-TGCAAAGGT-GACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|37387552|gb|CF630973.1|CF630973
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|32807879|gb|CD960113.1|CD960113
EST:     GATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|6194645|gb|AW146749.1|AW146749
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|32942240|gb|CF047059.1|CF047059
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|71332072|gb|DR802940.1|DR802940
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|60346669|gb|DN213642.1|DN213642
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|87155487|gb|DY400276.1|DY400276
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|91055003|gb|EB165421.1|EB165421
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|32807970|gb|CD960204.1|CD960204
EST:     GATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|166616159|gb|EG305888.1|EG305888
EST:     AGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: AGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|32942346|gb|CF047165.1|CF047165
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
EST: gi|91052461|gb|EB162879.1|EB162879
EST:     GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAG                         GTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC
genomic: GTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 257

CCGTGAAAATTACTCTCCAGGTTGGAAGTATTCCCACTGGGAAATGAAAGGTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACCAATTTGGTTGAAGAGGTTAAAGTGTTACTGGATGAGATTCAAAAAAATC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 296

CCGTGAAAATTACTCTCCAGGTTGGAAGTATTCCCACTGGGAAATGAAAGGTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACCAATTTGGTTGAAGAGGTTAAAGTGTTACTGGATGAGATTCAAAAAAATC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 329

CCGTGAAAATTACTCTCCAGGTTGGAAGTATTCCCACTGGGAAATGAAAGGTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACCAATTTGGTTGAAGAGGTTAAAGTGTTACTGGATGAGATTCAAAAAAATC


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 174

CCGTGAAAATTACTCTCCAGGTTGGAAGTATTCCCACTGGGAAATGAAAGGTGTTCCATTGAGAATTGAGATTGGTCCAAAAGATCTGGCAAACAAACAGgtacctgagt ... tgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACCAATTTGGTTGAAGAGGTTAAAGTGTTACTGGATGAGATTCAAAAAAATC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcaattcccatgagtatgtgaaaaagtgagtgaaattatatcctgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACCAATTTGGTTGAAGAGGTTAAAGTGTTACTGGATGAGATTCAAAAAAATC
                                          tcctgtttttt  CT-rich tract
                                tgaaattatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cattctatatttgctgcaatgcccaatttactatatttttgtgaacttcaattcccatgagtatgtgaaaaagtgagtgaaattatatcctgttttttagGTGCGTGTTGTCCGCCGGGACAACGGTGCAAAGGTTGACATCCCTGTGACCAATTTGGTTGAAGAGGTTAAAGTGTTACTGGATGAGATTCAAAAAAATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - ttgctgc
- - - - - - - - -aatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgtg