Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatataaaatagcattacaaattttctggggaagaaccggacaacatctgaaatttctgatcgtgaacttatcagcttgcaccattttttttgcactatacctttttcgttcaatctatgcgttagaacttaatataagagtttctgtgcccagGCTTGCCGCACAAAAGCAGAGTATGAAGAGTACGGTGCGAGCATCTGCCGATCGAACCCTGTTTTCAAAGGGATGTACTGACTCAGCCTATCATAGTCCT

Basic information

species Zea mays
transcript GRMZM2G092459_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092459_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g38340.1 (Oryza sativa), 3'ss of exon 9
----------------gtatatataaaatagcattacaaatt----ttctggggaagaaccggacaacatctg-------aaatt----tctgatcgtgaacttatcagct----tgcaccattttttttgcactataccttt--ttcgttcaatctatgcgttagaacttaatataagagtttctgtgcccagGCTTGCCGCACAAAAGCAGAGTATGAAGAGTACGGTGCGAGCATCTGCCGATCGAACCCTGTTTTCAAAGGGATGTACTGACTCAGCCTATCATAGTCCT
                 | ||| || | ||| | |  | | |    |     | ||  |  | | | | | |        || ||     |  | | | || || |  | |    |  | |    | || |   | |   |||  ||  | || | ||    ||| | || | | |   |||||      ||||||||||| |||||||||||||||||||||||| || || |||||||||||  |||| |||||||||||||||||||||| |  ||       |   | ||
gtattcaaacttctatttctatgtacagtagtaatgaacactcatatcacttgaaactagtgcatagcgtttacttttgcaagttgtttccaaagcttaaatttttttgttggaatatatccccatattcggggtttctttttcctttttccattttagaaattaaagctaattctggtagttttcccaaccagGCTTGCCACACAAAAGCAGAGTATGAAGAGTATGGCGCAAGCATCTGCCGGACGAATCCTGTTTTCAAAGGGATGTACTAAACCACGGCGCAAAGCTTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78093377|gb|DV521751.1|DV521751
EST:     CGGTATGGTTTGGTGGATCTGTGCTTGCTTCAACTGCCGAATTCTACGAG                         GCTTGCCGCACAAAAGCAGAGTATGAAGAGTACGGTGCGAGCATCTGCCGA
genomic: CGGTATGGTTTGGTGGATCTGTGCTTGCTTCAACTGCCGAATTCTACGAGgtatatataa ... ctgtgcccagGCTTGCCGCACAAAAGCAGAGTATGAAGAGTACGGTGCGAGCATCTGCCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctttttcgttcaatctatgcgttagaacttaatataagagtttctgtgcccagGCTTGCCGCACAAAAGCAGAGTATGAAGAGTACGGTGCGAGCATCTGCCGATCGAACCCTGTTTTCAAAGGGATGTACTGACTCAGCCTATCATAGTCCT
                            acttaat  putative branch site (score: 4)
                                          tttctgt  putative PPT
                       ttagaacttaatataa  TA-rich tract