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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataccatgaagtgaaagatgatttgttctttatttttggcttcttaccttatttccttttcttaaaatgcagGTCTTTGGTCTTTACTTTATGCAGTCATATATTGGGTTATTTTACCATGCTTCATTGTATCGTGATATACTGGCCCTCCGCCAAGTCCTCATCCAGCGTC

Basic information

species Zea mays
transcript GRMZM2G091494_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091494_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g51040.1 (Oryza sativa), 3'ss of exon 9
gtaaataccatgaagtgaaagat--gatttgttctttatttttggcttcttaccttatttccttttcttaaaatgcagGTCTTTGGTCTTTACTTTATGCAGTCATATATTGGGTTATTTTACCATGCTTCATTGTATCGTGATATACTGGCCCTCCGCCAAGTCCTCATCCAGCGTC
||||| || |||| |  ||  ||  | ||    |||||| || || |||||||  | ||  |        ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| || | ||  | ||  |||| ||||| |||||||| ||| ||||||
gtaaacacaatgatgccaagaatatggttcacgctttatgttaggtttcttactcttttggc--------aaatgcagGTCTTTGGTCTTTACTTTATGCAATCATATATTGGATTGTTTTACCATGCTTCACTGCACCGCAACATTATGGCACTCCGGCAAGTCCTAATCAAGCGTC

upper sequence: GRMZM2G091494_T02 (Zea mays), 3'ss of exon 9
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 3'ss of exon 9
gtaaataccatgaagtgaaagatg--atttgttctttatttttggcttcttaccttatttccttttcttaaaa----------------tgcagGTCTTTGGTCTTTACTTTATGCAGTCATATATTGGGTTATTTTACCATGCTTCATTGTATCGTGATATACTGGCCCTCCGCCAAGTCCTCATCCAGCGTC
||||    || ||| |   | |||  ||||  | ||| || |   ||      ||   |   || |||| |||                | ||||| ||||||||||| || |||||||||||||||||| | || || |||      ||  | |||||  |     |||| ||||||||| | || |||||||
gtaatgggcaggaatttgtacatgccattttatttttgttctaccctctgagtctgggtaatttctctttaaaacaatttactttctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATCCTTTTACACCGTGACTTTAAAACCCTTCGCCAAGTCTTGATTCAGCGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatttgttctttatttttggcttcttaccttatttccttttcttaaaatgcagGTCTTTGGTCTTTACTTTATGCAGTCATATATTGGGTTATTTTACCATGCTTCATTGTATCGTGATATACTGGCCCTCCGCCAAGTCCTCATCCAGCGTC
                       ttcttac  putative branch site (score: 2)
        ttctttatttttggct  CT-rich tract
     ttgttctttattttt  TA-rich tract