1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtaatatctgtggttacccatctttggatctttgcagcttgttagttgcaagtagatgtatcccctaatggcatcctgttgtgatcccctttttttttagAATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAG
species | Zea mays |
transcript | GRMZM2G091419_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AATACACCGAAGGATATTTCAAAGAAACGCTGCTAAAAAAGAAAGTTGTG AATATTAGCATCAAAGAACTTGACCTGGATGCTGCCCGTGCTGAACGCCAGEST: gi|32921562|gb|CF026374.1|CF026374
genomic: AATACACCGAAGGATATTTCAAAGAAACACTGCTAAAAAAGAAAGTTGTGgtatgtaata ... ttttttttagAATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAG
EST: CAAAGAAACGCTGCTAAAAAAGAAAGTTGTG AATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAGEST: gi|32921418|gb|CF026230.1|CF026230
genomic: CAAAGAAACACTGCTAAAAAAGAAAGTTGTGgtatgtaata ... ttttttttagAATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAG
EST: AATACACTGAAGGATATTTCAAAGAAACGCTGCTAAAAAAGAAAGTTGTG AATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAGEST: gi|32922054|gb|CF026866.1|CF026866
genomic: AATACACCGAAGGATATTTCAAAGAAACACTGCTAAAAAAGAAAGTTGTGgtatgtaata ... ttttttttagAATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAG
EST: AATACACTGAAGGATATTTCAAAGAAACGCTGCTAAAAAAGAAAGTTGTG AATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAGEST: gi|32921169|gb|CF025981.1|CF025981
genomic: AATACACCGAAGGATATTTCAAAGAAACACTGCTAAAAAAGAAAGTTGTGgtatgtaata ... ttttttttagAATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAG
EST: AATACACTGAAGGATATTTCAAAGAAACGCTGCTAAAAAAGAAAGTTGTG AATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAG
genomic: AATACACCGAAGGATATTTCAAAGAAACACTGCTAAAAAAGAAAGTTGTGgtatgtaata ... ttttttttagAATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAG
ttgcaagtagatgtatcccctaatggcatcctgttgtgatcccctttttttttagAATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAG
ccctaat putative branch site (score: 16)
tgatcccctttttttt putative PPT
ttttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaatatctgtggttacccatctttggatctttgcagcttgttagttgcaagtagatgtatcccctaatggcatcctgttgtgatcccctttttttttagAATATTAGCATCAAAGAACTTGATCTGGATGCTGCCCGTGCTGAACGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC