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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgaatactggcactaagttcatttttttattatttttcactatctctttgcaactgatctctctgctaactcttagttttctgttaccagTGTTCCCAAACCCCACTCAGGCTTTGTTTGGGTAAAGAGGAACTGAAGTGGATTGAGGTGTATTGAAAGGACTGAAAGGGAAATTAGTTCATGTTACACT

Basic information

species Zea mays
transcript GRMZM2G087692_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241981|gb|DT649895.1|DT649895
EST:     CAGAAACAATTTGGTCCCAGTGAGAACTGAGCCTCACTGCTTCAGAAATG                         TGTTCCCAAACCCCACTCAGGCTTTGTTTGGGTAAAGAGGAACTGAAGTGG
genomic: CAGAAACAATTTGGTCCCAGTGAGAACTGAGCCTCACTGCTTCAGAAATGgtaggtgaat ... ctgttaccagTGTTCCCAAACCCCACTCAGGCTTTGTTTGGGTAAAGAGGAACTGAAGTGG
EST: gi|32827653|gb|CD967331.1|CD967331
EST:     AGAAACAATTTGGTCCCAGTGAGAACTGGAGCCTCACTGCTTCAGAAATG                         TGTTCCCAAACCCCACTCAGGCTTTGTTTGGGTAAAGAGGAACTGAAGTGG
genomic: AGAAACAATTTGGTCCCAGTGAGAACT-GAGCCTCACTGCTTCAGAAATGgtaggtgaat ... ctgttaccagTGTTCCCAAACCCCACTCAGGCTTTGTTTGGGTAAAGAGGAACTGAAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcactatctctttgcaactgatctctctgctaactcttagttttctgttaccagTGTTCCCAAACCCCACTCAGGCTTTGTTTGGGTAAAGAGGAACTGAAGTGGATTGAGGTGTATTGAAAGGACTGAAAGGGAAATTAGTTCATGTTACACT
                            tgctaac  putative branch site (score: 1)
                                         ttttctgtt  putative PPT
                                     ttagtttt  TA-rich tract