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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagctttgcatattattgtcactgctatatttcagagacatctttcatgttttgttagagttgcgctacttgtgtatgaggtttacatgttgtcaacatatgtttcctttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATAGCAACGGAAGTCATTGCCCGGGGAATGGACTTCAAAGGTGTCGCCTCTG

Basic information

species Zea mays
transcript GRMZM2G083580_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083580_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os07g45360.1 (Oryza sativa), 3'ss of exon 9
gtatagctttgcatattattgtcactgctatatttcagagacatctttcatgttttgttagagtt-gcgctacttgtgtatgaggt-ttacatgttg-tcaacatatgtttcctttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATAGCAACGGAAGTCATTGCCCGGGGAATGGACTTCAAAGGTGTCGCCTCTG
                            |||   | |    ||| |||  |   |  | |  ||| | | || || ||| |    |  ||||  | | ||||  | | | ||||  |||| |||||||||||||||||||||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||   ||  |
---------------------------gtatcacttaatatcatttttagttgctaataaatgtttgtggtagttttgttttcactgctacacttggctcaatttctatctcctc-actgaagCGTCAAGATGCTGTTGACAACTTGAGAGCCGGAAAGACTTGGGTACTGATAGCTACCGAAGTCATTGCCCGGGGAATGGATTTCAAAGGTGTTAACTGCG

upper sequence: GRMZM2G083580_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA03G33590.1 (Glycine max), 3'ss of exon 10
gtatagctttgcatattattgtcactgctatatttcagagacatctttcatgttttgttagagttgcgctacttgtgtatgaggtttacatgttgtcaacatatgtttcctttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATAGCAACGGAAGTCATTGCCCGGGGAATGGACTTCAAAGGTGTCGCCTCTG
           | | | ||  ||||   ||  |     |    |    |||  || |||| | | ||  |  ||||      ||||| | |  |    |  | | || | ||   |  ||||  || |||||||||| || || ||||||||||| || |||||  |||| || || || ||  |||||||||| ||||| |||||||||||   || ||
-----------cttttaatcatcaccaataggtactctaatgctaaagcatactt-gttaaattagcagtttttgt------ggtttccttaattctga--tctcttgcattgtgtatagCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766777|gb|DR964714.1|DR964714
EST:     TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
genomic: TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
EST: gi|40302886|gb|CK347273.1|CK347273
EST:     TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
genomic: TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
EST: gi|60356063|gb|DN223036.1|DN223036
EST:     TGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
genomic: TGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
EST: gi|71766778|gb|DR964715.1|DR964715
EST:     TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
genomic: TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
EST: gi|78115305|gb|DV533693.1|DV533693
EST:     TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
genomic: TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
EST: gi|78115306|gb|DV533694.1|DV533694
EST:     TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGCTGTTGACAATTTGAGAGCTGGNAAGACCTGGGTACTGATA
genomic: TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
EST: gi|32944128|gb|CF048947.1|CF048947
EST:     TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGT
genomic: TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGT
EST: gi|33098086|gb|CF058046.1|CF058046
EST:     TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGC
genomic: TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGC
EST: gi|60397325|gb|DN230141.1|DN230141
EST:     ATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
genomic: ATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATA
EST: gi|32930531|gb|CF035343.1|CF035343
EST:     TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAG                         CGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTAC
genomic: TTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagcttt ... tttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgctacttgtgtatgaggtttacatgttgtcaacatatgtttcctttactgcagCGTCAAGATGCTGTTGACAATTTGAGAGCTGGAAAGACCTGGGTACTGATAGCAACGGAAGTCATTGCCCGGGGAATGGACTTCAAAGGTGTCGCCTCTG
                                        tttcctttact  CT-rich tract
                                   atatgttt  TA-rich tract