1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaagtcttcctgatgtcttgaattcttctttaattcagcagacttgtgtactcatatatgtaccatgccgttctttgttttgatcattgcattgttgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCT
species | Zea mays |
transcript | GRMZM2G082855_T05 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACT GTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGEST: gi|148940443|gb|EC885241.2|EC885241
genomic: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACTgtaagtcttc ... tgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTG
EST: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACT GTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCTEST: gi|149079906|gb|EE168912.2|EE168912
genomic: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACTgtaagtcttc ... tgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCT
EST: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACT GTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCTEST: gi|148964982|gb|EC906062.2|EC906062
genomic: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACTgtaagtcttc ... tgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCT
EST: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACT GTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCTEST: gi|101383199|gb|EB813654.1|EB813654
genomic: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACTgtaagtcttc ... tgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCT
EST: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACT GTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCTEST: gi|148957491|gb|EC903572.2|EC903572
genomic: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACTgtaagtcttc ... tgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCT
EST: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACT GTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGA
genomic: ATCTCTGGAGAAATACCATACAACATAGGTTACCTTCAAGTAGCCACACTgtaagtcttc ... tgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGA
ctcatatatgtaccatgccgttctttgttttgatcattgcattgttgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCT
ttttgat putative branch site (score: 4)
ttgtttt putative PPT
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcttcctgatgtcttgaattcttctttaattcagcagacttgtgtactcatatatgtaccatgccgttctttgttttgatcattgcattgttgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG