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...tttagttaatataagcaacaatcgttgtgcagaaactgatctgaatgaacatatttcagttttgttactgatcctgtttttttttgtgtgctaaatgtagGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTCAGAGGCCGAATGCTGGAGTTCTAGAGATGTTACCCTTTGCGCCCCATGT
species | Zea mays |
transcript | GRMZM2G081924_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTCEST: gi|211331399|gb|FL462812.1|FL462812
genomic: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcg ... ctaaatgtagGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTC
EST: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTCEST: gi|211412952|gb|FL027552.1|FL027552
genomic: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcg ... ctaaatgtagGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTC
EST: CGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGATAGG GTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTCEST: gi|76292397|gb|DV031965.1|DV031965
genomic: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcg ... ctaaatgtagGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTC
EST: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTCEST: gi|31358885|gb|CD443242.1|CD443242
genomic: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcg ... ctaaatgtagGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTC
EST: CGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGATAGG GTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTCEST: gi|60341483|gb|DN208456.1|DN208456
genomic: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcg ... ctaaatgtagGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTC
EST: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTCEST: gi|113671290|gb|DW822058.1|DW822058
genomic: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcg ... ctaaatgtagGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTC
EST: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGG GGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCC
genomic: TGTTGAAATCCATATTGGTGGTGCTAAGGGGCCTCCAGACAGGgtatgtttcg ... ctaaatgtagG-TTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCC
tgaacatatttcagttttgttactgatcctgtttttttttgtgtgctaaatgtagGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTCAGAGGCCGAATGCTGGAGTTCTAGAGATGTTACCCTTTGCGCCCCATGT
tgctaaa putative branch site (score: 178)
tgttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagttaatataagcaacaatcgttgtgcagaaactgatctgaatgaacatatttcagttttgttactgatcctgtttttttttgtgtgctaaatgtagGTTTTCATCATTGGATCAGTGAATGAAGTCAGGAAAGCCGAGGCCATCTTCAGAGGCCGAATGCTGGAGTTCTAGAGATGTTACCCTTTGCGCCCCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - -caacaat
- - - - - - - - - - - - -tgtgcag
- - - - - - - - - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttact