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gtaaattaacggaatacctgttgcaaaactccatttgaatcagaaacgtatcttatatggtttgtcttctaaggaaccacctttgttttccctcctaattcttgcagAATTTCTTCTTTGAAATCATCAATGGTCTACGGCCAGCAAACACTGCAGGTTGCAGTTCATCAACCGATGCACCTAACATCCCACATG
species | Zea mays |
transcript | GRMZM2G081642_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATCAAAGCTTCATATGGGAGCATTTAAAGTTGGTAACATAACCAATGAG AATTTCTTCTTTGAAATCATCAATGGTCEST: gi|21329781|gb|BQ485162.1|BQ485162
genomic: GATCAAAGCTTCATATGGGAGCATTTAAAGTTGGTAACATAACCAATGAGgtaaattaac ... attcttgcagAATTTCTTCTTTGAAATCATCAATGGTC
EST: GATCAAAGCTTCATATGGGAGCATTTAAAGTTGGTAACATAACCAATGAG AATTTCTTCTTTGAAATCATCAATGGTCTACGGCCAGCAAACACTGCAGGTEST: gi|21481154|gb|BQ577837.1|BQ577837
genomic: GATCAAAGCTTCATATGGGAGCATTTAAAGTTGGTAACATAACCAATGAGgtaaattaac ... attcttgcagAATTTCTTCTTTGAAATCATCAATGGTCTACGGCCAGCAAACACTGCAGGT
EST: GATCAAAGCTTCATATGGGAGCATTTAAAGTTGGTAACATAACCAATGAG AATTTCTTCTTTGAAATCATCAATGGTCTACGGCCAGCAAACACTGCAGGT
genomic: GATCAAAGCTTCATATGGGAGCATTTAAAGTTGGTAACATAACCAATGAGgtaaattaac ... attcttgcagAATTTCTTCTTTGAAATCATCAATGGTCTACGGCCAGCAAACACTGCAGGT
ttatatggtttgtcttctaaggaaccacctttgttttccctcctaattcttgcagAATTTCTTCTTTGAAATCATCAATGGTCTACGGCCAGCAAACACTGCAGGTTGCAGTTCATCAACCGATGCACCTAACATCCCACATG
tcctaat putative branch site (score: 2)
ccacctttgttttccc CT-rich tract
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattaacggaatacctgttgcaaaactccatttgaatcagaaacgtatcttatatggtttgtcttctaaggaaccacctttgttttccctcctaattcttgcagAATTTCTTCTTTGAAATCATCAATGGTCTACGGCCAGCAAACACTGCAGGTTGCAGTTCATCAACCGATGCACCTAACATCCCACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG