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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgcaagtgcaagtgttattcaaattgtgttccttgagatattggtgacaattttcatattctatttcaactgtatttcagGTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG

Basic information

species Zea mays
transcript GRMZM2G081188_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081188_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g66350.1 (Oryza sativa), 3'ss of exon 9
gtttgtgcaagtgc----aagtgttattcaaattgtgttccttgagatattggtgacaattttcatattctatttcaactgtatttcagGTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG
|||||| | |||||     | ||  ||     |||  |||    | |||||||     ||||   | | |      ||||   ||||||| ||| | ||||||||||| |||||||| || ||||||||| |||||||||| ||  ||||||||
gtttgtaccagtgcttctgattgcaatcattcttgaattctgatacatattggatggcatttcattgtccatgcataactaattttcagGATCACGATTTGGAGAAGCGTTTCAAGAACCTGCTTCATTTGTTGCCATACGGCCATTGTTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211302733|gb|FL372536.1|FL372536
EST:     ACAGGAGACGATATTTAATCCACCTTGGCGGCATGAGCCAGTCGCAATAG                         GTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATAC
genomic: ACAGGAGACGATATTTAATCCACCTTGGCGGCATGAGCCAGTCGCAATAGgtttgtgcaa ... tgtatttcagGTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATAC
EST: gi|211421799|gb|FL427212.1|FL427212
EST:     ACAGGAGACGATATTTAATCCACCTTGGCGGCATGAGCCAGTCGCAATAG                         GTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATAC
genomic: ACAGGAGACGATATTTAATCCACCTTGGCGGCATGAGCCAGTCGCAATAGgtttgtgcaa ... tgtatttcagGTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATAC
EST: gi|31353527|gb|CD437884.1|CD437884
EST:     ACAGGAGACGATATTTAATCCACCTTGGCGGCATGAGCCAGTCGCAATAG                         GTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATAC
genomic: ACAGGAGACGATATTTAATCCACCTTGGCGGCATGAGCCAGTCGCAATAGgtttgtgcaa ... tgtatttcagGTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATAC
EST: gi|32930803|gb|CF035615.1|CF035615
EST:     ACAGGAGACGATATTTAATCCACCTTGGCGGCATGAGCCAGTCGCAATAG                         GTTCAAGGTTTGGGGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATAC
genomic: ACAGGAGACGATATTTAATCCACCTTGGCGGCATGAGCCAGTCGCAATAGgtttgtgcaa ... tgtatttcagGTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttccttgagatattggtgacaattttcatattctatttcaactgtatttcagGTTCAAGGTTTGGAGAAGCATTTCAAGAGCCAGCTTCATTTCTTGCCATACGACCTCTGTTTGAG
                       aattttcatattctat  TA-rich tract