Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggcttgtggtccaaaccttctgtctcattgtcaatgtggggacagagacttcatctaccattcagttagctatgttataataaatggatgatccctgttgaacgaaccatgtctcgctgtccttttcgttagctggggtggtgtgtccctggtctcatcccaatactgaatctgtagcgtttcttggtcgtgcagGATCATTTCAAGAAGAAGCCCAGCTTCCCGATAACCCTCAAGTACATCGACCCGACCTACATGATCCGCGCCGTCCGGTCGAATGCTTCTGACAACGTCT

Basic information

species Zea mays
transcript GRMZM2G080375_T04
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080375_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 3'ss of exon 9
gtcaggcttgtggtccaaaccttctgtctcattgtcaatgtggggacagagacttcatctaccattcagttagctatgttataataaatggatgatccctgttgaacgaaccatgtctcgctgtccttttcgttagctggggtggtgtgtccctggtctcatccc-aatactgaatctgtagcgtttcttggtcgtgcagGATCATTTCAAGAAGAAGCCCAGCTTCCCGATAACCCTCAAGTACATCGACCCGACCTACATGATCCGCGCCGTCCGGTCGAATGCTTCTGACAACGTCT
                                                                                              ||   |||  |       | | || |  |  |        |       || |||| ||||| |||||| |  ||| ||||||   |  | ||||||  || |||||||||||||||||||||||| || |||||| || || |||||||||||||||||||| ||||||||||| |||||| |||| || || || ||||||||||
---------------------------------------------------------------------------------------------catatttgtcaatatcgtaaagcctggaagaacca------aagaaccatgatgtg-ccctgatctcattcagaatgctgaattacttccctttcttcatcatgcagGATCATTTCAAGAAGAAGCGCAACTTCCCCATCACTCTCAAGTACATCGACCCGACATACATGATCCGTGCCGTCAGGTCAAACGCATCCGACAACGTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234372|gb|DT642286.1|DT642286
EST:     GAAACAAGCTGCTTCTGGATGTCGGCCTTTGGCTATCCCAGAAGATAAAG                         GATCATTTCAAGAAGAAGCCCAGCTTCCCGATAACCCTCAAGTACATCGAC
genomic: GAAACAAGCTGCTTCTGGATGTCGGCCTTTGGCTATCCCAGAAGATAAAGgtcaggcttg ... ggtcgtgcagGATCATTTCAAGAAGAAGCCCAGCTTCCCGATAACCCTCAAGTACATCGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgtccctggtctcatcccaatactgaatctgtagcgtttcttggtcgtgcagGATCATTTCAAGAAGAAGCCCAGCTTCCCGATAACCCTCAAGTACATCGACCCGACCTACATGATCCGCGCCGTCCGGTCGAATGCTTCTGACAACGTCT
                                       tttcttg  CT-rich tract