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gttgtcgtttacgcttatatgctctttttgttatttatttagtttttttttgcttttcattttctatgtactaatgcaagtgttatcaactttttttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGGACTTATTGAAGAACATCAGAACCCAAGTGCTGCTCAAGCTTATTAAAC
species | Zea mays |
transcript | GRMZM2G079196_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|33096883|gb|CF056843.1|CF056843
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: GTACCAGAAGAACGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|67012630|gb|CO441379.1|CO441379
genomic: GTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|211450030|gb|FL052872.1|FL052872
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAKAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|211507840|gb|FL110003.1|FL110003
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|67023333|gb|CO452082.1|CO452082
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|211507839|gb|FL110002.1|FL110002
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|74246199|gb|DT654113.1|DT654113
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|18659527|gb|BM500385.1|BM500385
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGAEST: gi|83279086|gb|DV943094.1|DV943094
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGA
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|37375261|gb|CF624055.1|CF624055
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: CAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|211507835|gb|FL109998.1|FL109998
genomic: CAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|211450033|gb|FL052875.1|FL052875
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|45847141|gb|CN071084.1|CN071084
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|60394631|gb|DN227501.1|DN227501
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGEST: gi|211507838|gb|FL110001.1|FL110001
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
EST: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG AGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
genomic: TTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAGgttgtcgttt ... tttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAG
ttgcttttcattttctatgtactaatgcaagtgttatcaactttttttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGGACTTATTGAAGAACATCAGAACCCAAGTGCTGCTCAAGCTTATTAAAC
tactaat putative branch site (score: 547)
tcaacttttttttt putative PPT
ttatcaactttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtcgtttacgcttatatgctctttttgttatttatttagtttttttttgcttttcattttctatgtactaatgcaagtgttatcaactttttttttggcagAGTAATAGAAGAACAATAATGGACGATCCTTTTATCCGTAACTATATTGAGGACTTATTGAAGAACATCAGAACCCAAGTGCTGCTCAAGCTTATTAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT