1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtaggccgtatatgaagcatctgggtactctgtacaagattttcctaatgagatatatatgatcatcacacgtctaaatctgaaacttttgaacttacagAATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAGTGTTAATGTTGAGGGAGCTAGAAGAATAGCATTTAAGCATATAGAAACC
species | Zea mays |
transcript | GRMZM2G079031_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGGCACGTTTCATGTCTGCACTAGCACTAGCATATATGTTTGACGGAAG AATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAGEST: gi|31354799|gb|CD439156.1|CD439156
genomic: ATGGCACGTTTCATGTCTGCACTAGCACTAGCATATATGTTTGACGGAAGgtaccatttt ... gaacttacagAATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAG
EST: ATGGCACGTTTCATGTCTGCACTAGCACTAGCATATATGTTTGACGGAAG AATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAGEST: gi|47961667|gb|CN844376.1|CN844376
genomic: ATGGCACGTTTCATGTCTGCACTAGCACTAGCATATATGTTTGACGGAAGgtaccatttt ... gaacttacagAATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAG
EST: GTCTGCACTAGCACTAGCATATATGTTTGACGGAAG AATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAGEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GTCTGCACTAGCACTAGCATATATGTTTGACGGAAGgtaccatttt ... gaacttacagAATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAG
EST: ATGGCACGTTTCATGTCTGCACTAGCACTAGCATATATGTTTGACGGAAG AATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAGEST: gi|50329592|gb|CO524718.1|CO524718
genomic: ATGGCACGTTTCATGTCTGCACTAGCACTAGCATATATGTTTGACGGAAGgtaccatttt ... gaacttacagAATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAG
EST: ATGGCACGTTTCATGTCTGCACTAGCACTAGCATATATGTTTGACGGAAG AATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAG
genomic: ATGGCACGTTTCATGTCTGCACTAGCACTAGCATATATGTTTGACGGAAGgtaccatttt ... gaacttacagAATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAG
taatgagatatatatgatcatcacacgtctaaatctgaaacttttgaacttacagAATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAGTGTTAATGTTGAGGGAGCTAGAAGAATAGCATTTAAGCATATAGAAACC
atatatatgatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggccgtatatgaagcatctgggtactctgtacaagattttcctaatgagatatatatgatcatcacacgtctaaatctgaaacttttgaacttacagAATGGATGAAGTTGCTTTGGTTGGAGCATCCTCAGATAGCAGTTCCAAGAGTGTTAATGTTGAGGGAGCTAGAAGAATAGCATTTAAGCATATAGAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - gcatctg
- - - - - - - - - - - - - - -ctgtaca