Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaaactagttgacttcttaatttgtttatttgtaaaactgttaataatataatgtgctgctccagGTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCTATGGGATCTTTGATGGTTGTAATACTAATTCAGACCATCAAGTACAACC

Basic information

species Zea mays
transcript GRMZM2G078576_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078576_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g56630.1 (Oryza sativa), 3'ss of exon 9
gtaaggaaactagttgacttcttaatttgtttatttgtaaaactgttaataatataatgtgctgctccagGTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCTATGGGATCTTTGATGGTTGTAATACTAATTCAGACCATCAAGTACAACC
||||| ||  |  || |||   || ||   |||||   |||| |||||||  | | ||||  |  || ||||||||||  | || |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |  |||||||| |||||||
gtaagcaagttgatttactatatatttatattattca-aaaagtgttaatgcttttatgtattattctagGTGCTTCCGAGCGTCCCTTGGTACCATGAGCGCCTTATGCATCAAACTTCTTTGGGATCTTTGATGGTTGTTATACTAATCCGAACCATCAAATACAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211241026|gb|FL065527.1|FL065527
EST:     TCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTG                         GTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCT
genomic: TCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTGgtaaggaaac ... gctgctccagGTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCT
EST: gi|7304677|gb|AW600616.1|AW600616
EST:     TCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTG                         GTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCT
genomic: TCCTGATCCTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTGgtaaggaaac ... gctgctccagGTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttcttaatttgtttatttgtaaaactgttaataatataatgtgctgctccagGTGCTTCCTGGTGTTCCTTGGTACCATGAACGCCTGATGCATCAAACTTCTATGGGATCTTTGATGGTTGTAATACTAATTCAGACCATCAAGTACAACC
                            tgttaat  putative branch site (score: 3)
                                              ctgctcc  putative PPT
      ttaatttgtttatttg  TA-rich tract