Sequence
atgc intronic sequence ATGC exonic sequence...gaggtgaaaagatggttttgtttttttgcatttcaatgtttaatagtttaacaactagaataaccttactgatgaagtgttgtactttgtgtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G078458_T04 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 3'ss of exon 10
--gaggtgaaaagatggttttgtttttttgcatttcaatgtttaatagtttaacaactagaataaccttactgatgaagtgttgta-ctttgtgtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATG
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gagaaactacaaaatgattaaatgtcatcaaatattcataccgttta---tgattactgaaatatagttgctgatgaaatgacatagttttgtttacttgcagGAACTACTATACCTCTATGGATTTGTAATTGACAACAATCCTGACGATTATCTCATG
upper sequence: GRMZM2G078458_T04 (Zea mays), 3'ss of exon 10
lower sequence: Vv04s0043g00790.t01 (Vitis vinifera), 3'ss of exon 10
gaggtgaaaagatggttt-tgtttttttgcatttcaatgtttaatagtttaa---caactag---aataaccttactgatgaagtgttgtactttgtgtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATG
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-------gactgtggcttataccattgtgaatgttaccagataggaaactgagtgctactagctaagcaacttctgaacgaaaaaagtttcctttcctttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211219813|gb|FL295369.1|FL295369EST: CTGAGACTGGAGCANAGATCTGCATAAACTACGGCAACAAAGGAAATGAG GAACTACTGTACCTTTATGGATTTGNGGTTGACAACAATCCTGATGATTAT
genomic: CTGAGACTGGAGCAGAGATCTGCATAAACTACGGCAACAAAGGAAATGAGgtattactca ... gtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttaacaactagaataaccttactgatgaagtgttgtactttgtgtacttacagGAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATG
tactgat putative branch site (score: 2)
tagaataa TA-rich tract