1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcaagaagaattcttgacatctgagatttgatcatttttgtgcatattatttcattgtgcatgatgttattgtgctctttaacttaaccagGGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCTTGAGGAGGCCCGGAACCAATGGGAGCGTCAAGGAATCAGAGTTGTTGTC
species | Zea mays |
transcript | GRMZM2G077222_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAACTTCAGTATGAGCTTGAAGTGGAGAGGAAGGCGTTATCTATGGCAAG GGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCTEST: gi|211009569|gb|FL317973.1|FL317973
genomic: CAACTTCAGTATGAGCTTGAAGTGGAGAGGAAGGCGTTATCTATGGCAAGgcaagaagaa ... acttaaccagGGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCT
EST: CAACTTCAGTATGAGCTTGAAGTGGAGAGGAAGGCGTTATCTATGGCAAG GGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCTEST: gi|31353323|gb|CD437680.1|CD437680
genomic: CAACTTCAGTATGAGCTTGAAGTGGAGAGGAAGGCGTTATCTATGGCAAGgcaagaagaa ... acttaaccagGGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCT
EST: CAACTTCAGTATGAGCTTGAAGTGGAGAGGAAGGCGTTATCTATGGCAAG GGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCTEST: gi|211241843|gb|FL338023.1|FL338023
genomic: CAACTTCAGTATGAGCTTGAAGTGGAGAGGAAGGCGTTATCTATGGCAAGgcaagaagaa ... acttaaccagGGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCT
EST: CAACTTCAGTATGAGCTTGAAGTGGAGAGGAAGGCGTTATCTATGGCAAG GGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCTEST: gi|211160906|gb|FL469885.1|FL469885
genomic: CAACTTCAGTATGAGCTTGAAGTGGAGAGGAAGGCGTTATCTATGGCAAGgcaagaagaa ... acttaaccagGGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCT
EST: GTGGAGAGGAAGGCGTTATCTATGGCAAG GGCTTGGGCAGAGGAGGAAGCCAAAAAGCCCCGGGAGCATGCACGCGCCCT
genomic: GTGGAGAGGAAGGCGTTATCTATGGCAAGgcaagaagaa ... acttaaccagGGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCT
tttgtgcatattatttcattgtgcatgatgttattgtgctctttaacttaaccagGGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCTTGAGGAGGCCCGGAACCAATGGGAGCGTCAAGGAATCAGAGTTGTTGTC
ctttaac putative branch site (score: 3)
atattatttcattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagaagaattcttgacatctgagatttgatcatttttgtgcatattatttcattgtgcatgatgttattgtgctctttaacttaaccagGGCTTGGGCAGAGGAGGAAGCCAAAAAGGCCCGGGAGCATGCACGCGCCCTTGAGGAGGCCCGGAACCAATGGGAGCGTCAAGGAATCAGAGTTGTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA