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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacatcattctgtcaagttctcttatttatgtttctagtttagacgacaatgctattgtttgtttcattgcactcattattttttgtaatatacatgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA

Basic information

species Zea mays
transcript GRMZM2G076484_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G076484_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g20580.1 (Oryza sativa), 3'ss of exon 9
aacatcattctgtcaagttctcttatttatgtttctagtttagacgacaatgctattgtttgtttcattgcactcattattttttgtaatatacat---gcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
    |  || | | || || | |  ||| | |   |   |  |    || |  ||||  |  | |  |  ||||  || |||||| |  | || ||   ||||||||| || |||||||| || ||||||||||||||||| ||||| ||||| || ||||||||||| ||||||||||| || ||||| || ||||||||||
-ttgtgtttttatgaatttatttcctttttatcattgcatccg-tagcacttttatt-ctcatctgttaacacttgtttttttttcttttgtatattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTGTCATTAACTATAGCTATCCTTTGACTACAGAGGATTATGTCCACAGGA

upper sequence: GRMZM2G076484_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA01G01390.1 (Glycine max), 3'ss of exon 10
aacatcattctgtcaagttctcttat--ttatgtttctagtttagacgacaatgctattgtttgtttcattgcactcattattttttgtaatata-catgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
  |   | |  || |||| |   |    | ||   || |   |     ||| |  | ||||||  |||| | ||   |||    ||   |||  |    |||||||||||| ||||| ||  |||| ||| | |||||||| ||||||||||||||||| |||||||||| |||| |||| || || || || || || || |
--ctgtactgggtaaagtacgaatgacatgatccctcaaacattctgcacacttttgttgttttattcagt-catatatttgacttaacaattcaatgagcagATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAA

upper sequence: GRMZM2G076484_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA09G34390.1 (Glycine max), 3'ss of exon 10
--aacatcattctgt-caagttctcttatttatgtttctagtttagacgacaatgctattgtttgtttcattgcactcattattttttgtaatata-catgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
   |    || | || | | |    |||| | | |    | | |  ||     | || ||||||   ||| | ||   |||    ||   |||  |    |||||||||||| ||||| ||  |||| ||| | |||||||| ||||||||||||||||| |||||||||| |||| |||| || || || || || || || |
tatagtggatacagtacgaatgacattatctgt-tagacattctgcacact--ttctgttgttttactcagt-catatatttgacttaaaaattcaatgagcagATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAA

upper sequence: GRMZM2G076484_T02 (Zea mays), 3'ss of exon 8
lower sequence: Vv02s0109g00380.t01 (Vitis vinifera), 3'ss of exon 12
aacatcattctgtcaagttctcttatttatgtttctagtttagacgacaatgctattgtttgtttcattgcact-cattattttttgtaatatacatgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
||    | | |   ||| || ||   |  |  || || |||             | ||    || ||  | |   ||||  |||   | || |   ||||||| ||||||||||| ||| |||| ||| | |||||||| ||||| ||||||||||| ||||| |||| |||| | || || ||||| || || ||||| |
aattaaaatgttctaagatcact-gctggttattatattttgagtccttgcaagagtggaaattgcaaagtatgacatttatttgctttatgtttgtgcagATAGCTACAGATGTGGCTGCACGAGGATTGGATATTCCAGATGTGGAAGTAGTGATCAACTACAGTTTTCCTCTCACTACAGAGGATTATGTTCACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaatgctattgtttgtttcattgcactcattattttttgtaatatacatgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
                            tcattattttttgtaa  TA-rich tract