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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgaactatgtttcttaattagtggcattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG

Basic information

species Zea mays
transcript GRMZM2G075153_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G075153_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g25940.2 (Oryza sativa), 3'ss of exon 8
-----------------------------gtgtgaactatgtttcttaattagtggcattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG
                             ||   | |||||   ||  |  ||| |   |   ||||    |||||||  || |   | |||| || | | |  ||||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||  |||||||||||
gtttgcaaactctgcacttttcatttgttgtacaagctatgaagct--acgagtagttctttttgttgtg-ttgttttttctgagtctcttatttcctatccttagATTGCACGTGTCTACTATCCTGGTCTGCCAAGTCACCCAGAACATCACATTGCCAAGAGTCAGATGACCGGCTTTGGTGGTGTCATTAGTTTTGAG

upper sequence: GRMZM2G075153_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA09G37020.1 (Glycine max), 3'ss of exon 8
--------------------gtgtgaactatgt---ttcttaattagtggcattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG
                       |  | |||||   |  ||   |  | |  | |  | | | |  ||  || |||     |     ||  | ||  ||| |    || ||||||||||| |||||||| ||||||||||||||| |  |||||||||| || |||||||| || || |||||||| |||||||||
ataccattttatcattttacagattcaatatgtaaatattttcatgattgagtcctgtatctgatgtgacttggctttaattacatactactattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAG

upper sequence: GRMZM2G075153_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA09G37020.3 (Glycine max), 3'ss of exon 8
--------------------gtgtgaactatgt---ttcttaattagtggcattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG----
                       |  | |||||   |  ||   |  | |  | |  | | | |  ||  || |||     |     ||  | ||  ||| |    || ||||||||||| |||||||| ||||||||||||||| |  |||||||||| || |||||||| || || |||||||| |||||||||    
ataccattttatcattttacagattcaatatgtaaatattttcatgattgagtcctgtatctgatgtgacttggctttaattacatactactattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAGGTGG

upper sequence: GRMZM2G075153_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA18G49660.1 (Glycine max), 3'ss of exon 8
---------------------gtgtgaactatgtttcttaa--ttagtggcattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG
                      |    | |  || | | ||  ||      |||   |  |  |  || | | |||     |     || || ||  ||| |    || ||||||||||| |||||||| ||||| ||||||||| |  |||||||||| || |||||||| || || |||||||| |||||||||
ttcttataccattttatcattttacagattcagtatgtaaacattttcatgattgagtcctgtatctgatgtggctttaattacatactattattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAG

upper sequence: GRMZM2G075153_T02 (Zea mays), 3'ss of exon 8
lower sequence: Vv14s0108g01110.t01 (Vitis vinifera), 3'ss of exon 8
---------------------gtgtgaa---ctatgtttcttaattagtgg-cattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG
                     || ||||    |   ||  | ||    |   ||||     | | |||  | | ||    |||| | ||   |  ||  ||| |     | ||||| ||||| |||||||||||||||||||||||||| ||||||||| | || |||||||| ||||| || || || |||||||||
gcagtaaggttgcaagaatccgtatgaaaaattgcattcttcaaaatataatcatttaccatcttaatc-tgtgagaccctgat-tgatagatcattggcagGTGAAATGCGTCTATTATCCAGGCTTGCCAAGTCACCCTGAACATCATATTGCCAAGCGACAGATGACTGGTTTTGGTGGAGTAGTCAGTTTTGAG

upper sequence: GRMZM2G075153_T02 (Zea mays), 3'ss of exon 8
lower sequence: PP1S152_35V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------------------------gtgtgaactatgtttct---taattagtggcattccatgtttcaattgtttta-gctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG
                                              ||| |   || |||||   |||||  |  |        ||  |     ||   | | ||| |    ||  |  || | || | || |||||  | |||||||| |||  |||||| || || ||||| ||||||||| | || ||||  || |||||||||||| |||||||||||
gtataccacttgaagtactctcaggatcggaaaatgtgtttctctttgtaagggatatttctagttaatttttttcccctagcattatagagacttggtgttcatggtaccgtccttcattac-agGTGGCACGTGTACATTATCCTGGTTTGGAAAGTCATCCAGAGCATCAGATTGCCAAGCGACAGATGAGCGGGTTTGGCGGTGTTATTAGTTTTGAG

upper sequence: GRMZM2G075153_T02 (Zea mays), 3'ss of exon 8
lower sequence: PP1S49_246V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------------------------------------gtgtgaactatgtttcttaattagtggcattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG
                                         | ||| | | | ||||| | | ||    ||| | ||    |   | | |    | | ||| | |  ||||    ||| | || |||||  | |||||||| ||   |||||| || |||||||| ||||| ||| | || ||||||||||||||||||||  |||||||||||
gtttgcagtgtgttgaactggatcttgaaatgtgttttactgcgtggagtctatttct-agtcaggttgattacttgacctatagggtcttataattcatgatgttgcttg----cagGTGGCACGTGTACATTATCCTGGATTAGAAAGTCATCCAGAACATCAGATTGCGAAGCGACAGATGACTGGCTTTGGCGGTGTCATTAGTTTTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89248894|gb|DY620680.1|DY620680
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|149094738|gb|EE180294.2|EE180294
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTTTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|67012102|gb|CO440851.1|CO440851
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|60395696|gb|DN228566.1|DN228566
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|4804475|gb|AI665345.2|AI665345
EST:     AGAACGACCCTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|9825106|gb|BE575308.1|BE575308
EST:     GAACGACACTGCTCTTCGGATGGCCCANG-TTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: GAACGACACTGCTCTTCGGATGGCCCA-GTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|88750228|gb|DY534369.1|DY534369
EST:     GTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: GTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|211303407|gb|FL181618.1|FL181618
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|71419167|gb|DR804675.1|DR804675
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|61119178|gb|DN560139.1|DN560139
EST:     AGAACGACACTGCTCTTTGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|67012003|gb|CO440752.1|CO440752
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|211484408|gb|FL480088.1|FL480088
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|60398293|gb|DN231109.1|DN231109
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|78122335|gb|DV540719.1|DV540719
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTTTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|13515896|gb|BG518172.1|BG518172
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|4647443|gb|AI622518.1|AI622518
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|76291941|gb|DV031509.1|DV031509
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|60355129|gb|DN222102.1|DN222102
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|29946122|gb|CB815990.1|CB815990
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|60352254|gb|DN219227.1|DN219227
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|74245809|gb|DT653723.1|DT653723
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|71763831|gb|DR961768.1|DR961768
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|60397682|gb|DN230498.1|DN230498
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|47962545|gb|CN845254.1|CN845254
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|213192843|gb|FM182914.1|FM182914
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|32914041|gb|CF018853.1|CF018853
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: gi|30705989|gb|CD058994.1|CD058994
EST:     AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG                         ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtggcattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG
                           agctaat  putative branch site (score: 3)
                                      ttatctcttgttccc  putative PPT
              tttcaattgtttta  TA-rich tract