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gttagctaatatagagttccttaacatgaactatgattatgactcaatttaactttcatacataatttttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGCTTGGCACTGCTAAAAAG
species | Zea mays |
transcript | GRMZM2G074790_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAG GTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGEST: gi|87152753|gb|DY397542.1|DY397542
genomic: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAGgttagctaat ... ttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATG
EST: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAG GTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGEST: gi|19822484|gb|BQ048508.1|BQ048508
genomic: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAGgttagctaat ... ttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATG
EST: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAG GTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGEST: gi|31350305|gb|CD434662.1|CD434662
genomic: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAGgttagctaat ... ttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATG
EST: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAG GTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGEST: gi|211181730|gb|FL012621.1|FL012621
genomic: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAGgttagctaat ... ttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATG
EST: GTGATGACTGGAGGAGAG GTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGEST: gi|18649956|gb|BM498775.1|BM498775
genomic: GTGATGACTGGAGGAGAGgttagctaat ... ttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATG
EST: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAG GTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGEST: gi|22489691|gb|BU049614.1|BU049614
genomic: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAGgttagctaat ... ttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATG
EST: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAG GTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGEST: gi|87153562|gb|DY398351.1|DY398351
genomic: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAGgttagctaat ... ttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATG
EST: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAG GTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATG
genomic: AAAATAGAAGGCACAATCTAGATGACATGGCTGTGATGACTGGAGGAGAGgttagctaat ... ttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATG
acatgaactatgattatgactcaatttaactttcatacataatttttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGCTTGGCACTGCTAAAAAG
atttaac putative branch site (score: 3)
tttttatctc putative PPT
tcaatttaactttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctaatatagagttccttaacatgaactatgattatgactcaatttaactttcatacataatttttatctcaagGTTATTAGCGAGGAACGCGGTCTTGATCTTGGCAAAGTTCAATTACAAATGCTTGGCACTGCTAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG