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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgtgttgctgtttttggtagttgttttgaataatatagctgattcaagaacaggatcttatttcatttgttttcttgataatttcctcaaactagGTGGGCATGATGATAAGAAGCTGATGATTCCTACTACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGA

Basic information

species Zea mays
transcript GRMZM2G074351_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074351_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os04g41910.1 (Oryza sativa), 3'ss of exon 9
gtaatttgtgttgctgtttttggtagttgttttg--aataatatagc-tgattcaagaacaggat--cttatttcatttgttt---tcttgataatttcctcaaactagGTGGGCATGATGATAAGAAGCTGATGATTCCTACTACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGA
         || |   |    || |  | ||||   |  |    | | |||     |||    ||  ||| ||| |||| |||   |  | | | ||| ||   | ||||||| |||||||| |||||| ||| |||| | |||||||| ||||| ||||| ||||||||||||||||| ||  ||
---------gtagtcatgcaaggaaaatattttatcatcagccgaacatgagctttgaatgatataacttgttttatttctttgtattgtaacacttttctgctattagGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32837936|gb|CD977614.1|CD977614
EST:     GAAGACAAAATGCTTGGATGGG                         GTGGGCATGATGATAAGAAGCTGATGATTCCTACTACAGTAATTTTAAGGC
genomic: GAAGACAAAATGCTTGGATGGGgtaatttgtg ... ctcaaactagGTGGGCATGATGATAAGAAGCTGATGATTCCTACTACAGTAATTTTAAGGC
EST: gi|211013609|gb|FL363381.1|FL363381
EST:     AGATAAAAAAGGTTGAAGACAAAATGCTTGGATGGG                         GTGGGCATGATGATAAGAAGCTGATGATTCCTACTACAGTAATTTTAAGGC
genomic: AGATAAAAAAGGTTGAAGACAAAATGCTTGGATGGGgtaatttgtg ... ctcaaactagGTGGGCATGATGATAAGAAGCTGATGATTCCTACTACAGTAATTTTAAGGC
EST: gi|211309996|gb|FL325113.1|FL325113
EST:     CAAAAGAAAAGGAAGATAAAAAAGGTTGAAGACAAAATGCTTGGATGGG                         GTGGGCATGATGATAAGAAGCTGATGATTCCTACTACAGTACATTTTAAGG
genomic: CAAAAGAAAAGGAAGATAAAAAAGGTTGAAGACAAAATGCTTGGATGGGgtaatttgtg ... ctcaaactagGTGGGCATGATGATAAGAAGCTGATGATTCCTACTACAGTA-ATTTTAAGG
EST: gi|4753405|gb|AI657315.1|AI657315
EST:     GCAAAAGAAAAGGAAGATAAAAAAGGTTGAAGACAAAATGCTTGGATGGG                         GTGGGCATGATGAT
genomic: GCAAAAGAAAAGGAAGATAAAAAAGGTTGAAGACAAAATGCTTGGATGGGgtaatttgtg ... ctcaaactagGTGGGCATGATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcaagaacaggatcttatttcatttgttttcttgataatttcctcaaactagGTGGGCATGATGATAAGAAGCTGATGATTCCTACTACAGTAATTTTAAGGCACATGTTCACTCCTGCTGAGTTAAGA
                                tcttgat  putative branch site (score: 4)
                                         tttcctc  putative PPT
                 ttatttcatttgtttt  TA-rich tract