1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcgattgcataccctagttttcttgtactagatggagcttgcttggtgctaactgtgcccggcccccttccctttgtgatgaaattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACAGTGCTGACTTCGGCAAGGATTGAACGGGGTATCAGTGTATCACCTGAT
species | Zea mays |
transcript | GRMZM2G074037_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|78022855|gb|DV491242.1|DV491242
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|76014726|gb|DT941896.1|DT941896
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|18964891|gb|BM661269.1|BM661269
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|213188045|gb|FM184285.1|FM184285
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: GCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|78112489|gb|DV530883.1|DV530883
genomic: GCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|211416916|gb|FL328808.1|FL328808
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG -CTGTGCGCAA-CTGAATGAT-CCAANAA-CTCGAGTCCAGTGCGC-CT-CEST: gi|6031401|gb|AW076303.1|AW076303
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|78112490|gb|DV530884.1|DV530884
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|5871518|gb|AW017989.1|AW017989
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCCCGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|60397395|gb|DN230211.1|DN230211
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|32805840|gb|CD958074.1|CD958074
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATTCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|5607728|gb|AI901395.1|AI901395
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACEST: gi|18180461|gb|BM381671.1|BM381671
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
EST: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAG GCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
genomic: CTGCTATCCGAGCGGAGCGTGACTATGTCATTCACGAGGACTTCATGAAGgtgcgattgc ... aattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTAC
cttgcttggtgctaactgtgcccggcccccttccctttgtgatgaaattgttcagGCTGTGCGCAAGCTGAATGATGCCAAGAAGCTCGAGTCCAGTGCGCACTACAGTGCTGACTTCGGCAAGGATTGAACGGGGTATCAGTGTATCACCTGAT
tgctaac putative branch site (score: 116)
atgaaatt TA-rich tract