1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taaaaaaaacttataatttagaacagagggaatatatgttactcatgatagttcttcatgctattgtgctggaagctaattgtgaacgttatattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTTGCGCGGCATGAAGTAGGTCATGCACTCGTGGGAACTGCTGTAGCAAACC
species | Zea mays |
transcript | GRMZM2G072865_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCA GGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTTEST: gi|32926300|gb|CF031112.1|CF031112
genomic: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCAgtatgttgtt ... atattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTT
EST: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCA GGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTTEST: gi|32926533|gb|CF031345.1|CF031345
genomic: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCAgtatgttgtt ... atattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTT
EST: AAATAGTGGAAAAGGTTGCCTTCATCCGTCCGGTTGAGCGATCTATAGCA GGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAACCTGTTGTTEST: gi|32926980|gb|CF031792.1|CF031792
genomic: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCAgtatgttgtt ... atattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTT
EST: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCA GGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTTEST: gi|32925415|gb|CF030227.1|CF030227
genomic: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCAgtatgttgtt ... atattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTT
EST: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCA GGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGATGTTGTTEST: gi|32844467|gb|CD984148.1|CD984148
genomic: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCAgtatgttgtt ... atattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTT
EST: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCA GGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTTEST: gi|60338252|gb|DN205225.1|DN205225
genomic: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCAgtatgttgtt ... atattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTT
EST: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCA GGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTTEST: gi|32927000|gb|CF031812.1|CF031812
genomic: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCAgtatgttgtt ... atattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTT
EST: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCA GGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTT
genomic: AAATAGTGGAAAAGGTTGACTTCATCCGTGCGGTTGAGCGATCTATAGCAgtatgttgtt ... atattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTT
tgatagttcttcatgctattgtgctggaagctaattgtgaacgttatattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTTGCGCGGCATGAAGTAGGTCATGCACTCGTGGGAACTGCTGTAGCAAACC
agctaat putative branch site (score: 118)
ttatattatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaaaaaacttataatttagaacagagggaatatatgttactcatgatagttcttcatgctattgtgctggaagctaattgtgaacgttatattatcagGGGATAGAGAAAAAGCATGCAAAATTGAAGGGTAATGAAAAAGCTGTTGTTGCGCGGCATGAAGTAGGTCATGCACTCGTGGGAACTGCTGTAGCAAACC
-aaaaaaa
- - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - - - tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctgg