1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaagcttacttcgaatatcgtttctggttctacatatcatcagacagctctttaaaagataacattcttaacctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAGCTAGCGACGCGCAAGCTGAGTCGCAGATCCAGAGGATACAGACCTTGT
species | Zea mays |
transcript | GRMZM2G070218_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|50324617|gb|CO519743.1|CO519743
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|60338581|gb|DN205554.1|DN205554
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|211208198|gb|FL442564.1|FL442564
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|211208197|gb|FL442563.1|FL442563
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|148966442|gb|EE017448.2|EE017448
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTTTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|86468677|gb|DY235047.1|DY235047
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|149095243|gb|EE180868.2|EE180868
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTTTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCCCACTGCTGATAGTTCAEST: gi|60337499|gb|DN204472.1|DN204472
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|78073864|gb|DV502298.1|DV502298
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTTTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|211026346|gb|FL457625.1|FL457625
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTYTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|60354260|gb|DN221233.1|DN221233
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|60337794|gb|DN204767.1|DN204767
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAEST: gi|93281433|gb|EB673697.1|EB673697
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTTTTTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCTTCGAGCCCACTGCTGATAGTTCAEST: gi|86466258|gb|DY232630.1|DY232630
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
EST: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAG TCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
genomic: AAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgtaaaagctt ... ctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCA
ttctacatatcatcagacagctctttaaaagataacattcttaacctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAGCTAGCGACGCGCAAGCTGAGTCGCAGATCCAGAGGATACAGACCTTGT
tcttaac putative branch site (score: 2)
ttcttaacctcttc CT-rich tract
tttaaaagataacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagcttacttcgaatatcgtttctggttctacatatcatcagacagctctttaaaagataacattcttaacctcttcgcagTCACTTCATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAGCTAGCGACGCGCAAGCTGAGTCGCAGATCCAGAGGATACAGACCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT