1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtacttctttctagatctgttgaatgtagatgaacttaaacatgagaatcatgtatttttttcttgttttcttctgtagAAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGTACAGAGGATGGAAAACTATATACACCTGCAGCAGTGGATCTATTCAGAA
species | Zea mays |
transcript | GRMZM2G070045_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGATCCCCTCATGAACATGTATGTTGAGCGTATGCAGGCAACAACCAAG AAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGTEST: gi|67037440|gb|CO464256.1|CO464256
genomic: TGGATCCCCTCATGAACATGTATGTTGAGCGTATGCAGGCAACAACCAAGgtacttcttt ... tcttctgtagAAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGT
EST: TGGATCCCCTCATGAACATGTATGTTGAGCGTATGCAGGCAACAACCAAG AAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGTEST: gi|9732458|gb|BE511210.1|BE511210
genomic: TGGATCCCCTCATGAACATGTATGTTGAGCGTATGCAGGCAACAACCAAGgtacttcttt ... tcttctgtagAAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGT
EST: TGGATCCCCTCATGAACATGTATGTTGAGCGTATGCAGGCAACAACCAAG AAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGT
genomic: TGGATCCCCTCATGAACATGTATGTTGAGCGTATGCAGGCAACAACCAAGgtacttcttt ... tcttctgtagAAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGT
tgtagatgaacttaaacatgagaatcatgtatttttttcttgttttcttctgtagAAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGTACAGAGGATGGAAAACTATATACACCTGCAGCAGTGGATCTATTCAGAA
tcatgtatttttttct CT-rich tract
tatttttttcttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttctttctagatctgttgaatgtagatgaacttaaacatgagaatcatgtatttttttcttgttttcttctgtagAAATGGTACAGCAACATTTTGGAGGCTGACAAAACACAACCACCAAAGAGTACAGAGGATGGAAAACTATATACACCTGCAGCAGTGGATCTATTCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA