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gtaatgcttctagctctttgttctctcatttatctcaagctgtcaaattgaatattttatcctaagcttaaatacaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATGCTGATTCGTGAGAAACAGAAAGAACTTCAG
species | Zea mays |
transcript | GRMZM2G069916_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGATAA TGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATEST: gi|32847638|gb|CD987319.1|CD987319
genomic: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAAgtaatgcttc ... acaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACAT
EST: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGATAA TGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATEST: gi|94476347|gb|EB705305.1|EB705305
genomic: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAAgtaatgcttc ... acaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACAT
EST: AAAATACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAA TGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATEST: gi|32847430|gb|CD987111.1|CD987111
genomic: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAAgtaatgcttc ... acaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACAT
EST: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGATAA TGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATEST: gi|32832751|gb|CD972429.1|CD972429
genomic: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAAgtaatgcttc ... acaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACAT
EST: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGATAA TGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATEST: gi|32835473|gb|CD975151.1|CD975151
genomic: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAAgtaatgcttc ... acaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACAT
EST: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGATAA TGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATEST: gi|60340812|gb|DN207785.1|DN207785
genomic: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAAgtaatgcttc ... acaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACAT
EST: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAA TGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATEST: gi|32834150|gb|CD973828.1|CD973828
genomic: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAAgtaatgcttc ... acaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACAT
EST: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGATAA TGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACAT
genomic: AAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAAgtaatgcttc ... acaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACAT
tttatctcaagctgtcaaattgaatattttatcctaagcttaaatacaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATGCTGATTCGTGAGAAACAGAAAGAACTTCAG
aaattgaatattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcttctagctctttgttctctcatttatctcaagctgtcaaattgaatattttatcctaagcttaaatacaccaacagTGATCGACGTCTTGCTGACCATTTTGGTGGGAAATTACACCTAGGCTACATGCTGATTCGTGAGAAACAGAAAGAACTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC