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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagatatccatgtaccacaatgattttacctaaatacaatgcatgcataattttaaagtaatttggtagaattctaaggtatattatgtggcaaactttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCAAATTCTAAAATTCAAGCCTGATTTAGTCATAACTGAGAAAGGGCTCAGT

Basic information

species Zea mays
transcript GRMZM2G069765_T05
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069765_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os06g34690.1 (Oryza sativa), 3'ss of exon 9
gtaagagatatccatgtaccacaatgattttacctaaatacaatgcatgcataattttaaagtaatttg-gtagaattctaaggtatattatgtggcaaactttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCAAATTCTAAAATTCAAGCCTGATTTAGTCATAACTGAGAAAGGGCTCAGT
||||| |||    ||  |    |||| |||| || |  |  | ||  || |  ||| |   |  |||   | |   |   | || ||| | |||   | |   |||| ||||||||||||| ||||||||||||||||||||||||||||||| || |  || ||| ||||||||||||||||||||||  | || |||||||| ||||||
gtaagggatgg--ataaattcaaatg-ttttgccaatttgaattgt-tgaactattgtggtgctattgaagcaatgtagcatggaataatttgtaa-atatgctatttcagGCAGGTTCTGCTAGAGATGGAGGAAGAATACATAAAGAACCTCTGTGCGCAGATTTTAAAATTCAAGCCTGATTTAGTTGTCACAGAGAAAGGTCTCAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934292|gb|CF039104.1|CF039104
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|32930780|gb|CF035592.1|CF035592
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|22472423|gb|BU036903.1|BU036903
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|67025927|gb|CO454676.1|CO454676
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|32935251|gb|CF040063.1|CF040063
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|33098179|gb|CF058139.1|CF058139
EST:     AAGAAAGGAGAAAATCAGACCGACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|20802750|gb|BQ293800.1|BQ293800
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|67013717|gb|CO442466.1|CO442466
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGCTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|22545904|gb|BU098263.1|BU098263
EST:     GACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: GACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|33093977|gb|CF053971.1|CF053971
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|33094806|gb|CF054800.1|CF054800
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGGGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|22542007|gb|BU092445.1|BU092445
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
EST: gi|32933658|gb|CF038470.1|CF038470
EST:     AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTG                         GCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA
genomic: AAGAAAGGAGAAAATCAGACCAACGCTGAGTTGATGAAGGAAGAAGATTGgtaagagata ... tttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaagtaatttggtagaattctaaggtatattatgtggcaaactttattgcagGCAGGTTCTGTTAGAGATGGAGGAAGAATACATAAAGAACCTGTGCGGTCAAATTCTAAAATTCAAGCCTGATTTAGTCATAACTGAGAAAGGGCTCAGT
                                            ctttatt  CT-rich tract
                            tatattatgt  TA-rich tract